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See other SDF4 CNV Assays ›
Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1217579 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00226774_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 7 1351 NP_057260.2
NM_016547.2 7 1467 NP_057631.1
AF132749.1 7 1265 AAL75950.1
AF153686.1 7 1447 AAD51612.1
AF178986.1 7 1431 AAF44350.1
AK000717.1 5 2214
AK027277.1 8 943 BAB55012.1
AK055331.1 2 1946
AK075352.1 7 1285 BAC11563.1
AK126927.1 3 2869
AK222521.1 7 1269 BAD96241.1
AK223079.1 7 1267 BAD96799.1
AK315517.1 7 1270
BC006211.2 7 1232 AAH06211.1
BC007625.1 6 1100 AAH07625.1
BC008917.2 7 1251 AAH08917.1
BC011244.1 7 1205 AAH11244.1
BC022375.1 7 1285 AAH22375.1
L79912.1 6 1030 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss TAS1R3 LOC107985728 CPTP LOC100288069 TMEM240 LOC105378592 NOC2L LOC100132287 LOC284600 PUSL1 LOC100287934 LOC100134822 MIR6859-2 OR4F5 LOC105378947 GNB1 SLC35E2 FAM41C ATAD3B OR4F16 SAMD11 AGRN ATAD3A TMEM88B OR4F29 CCNL2 LINC00115 SLC35E2B MTND2P28 LINC01342 ANKRD65 FAM138A AURKAIP1 GABRD SKI DDX11L1 MIR6727 MXRA8 LOC107985729 RNF223 WASH7P TNFRSF18 MIB2 LOC100130417 LOC105378948 TTLL10 MMP23B ACAP3 ISG15 MIR6808 LINC01128 MIR1302-2 PERM1 LOC107984841 MIR6723 HES4 B3GALT6 LOC105378591 TTLL10-AS1 ATAD3C C1orf159 SCNN1D TMEM52 FAM132A KLHL17 SSU72 MTND1P23 MIR6726 DVL1 MIR200B FNDC10 MIR6859-1 MMP23A SDF4 LOC100288175 LOC100506504 LOC102725121 CFAP74 MIR429 MRPL20 FAM87B LOC102724312 PRKCZ NADK VWA1 LOC148413 TNFRSF4 PLEKHN1 FAAP20 LOC105378949 MORN1 UBE2J2 LOC100129534 CPSF3L LOC729737 MIR200A CALML6 CDK11A LOC100133331 LOC105378589 CDK11B LOC101928626
nsv544965 Chr.1:1217251 - 1306704 on Build GRCh38 Loss B3GALT6 SCNN1D ACAP3 FAM132A SDF4 UBE2J2 MIR6726
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain C1orf159 SCNN1D MIR429 RNF223 FAM132A TNFRSF18 LINC01342 UBE2J2 LOC105378948 TTLL10 B3GALT6 MIR200B MIR200A TTLL10-AS1 TNFRSF4 SDF4
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss C1orf159 SCNN1D MIR429 RNF223 FAM132A TNFRSF18 LINC01342 UBE2J2 TTLL10 MIR6726 B3GALT6 MIR200B ACAP3 MIR200A TTLL10-AS1 TNFRSF4 SDF4
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss B3GALT6 TTLL10-AS1 TNFRSF4 TNFRSF18 SDF4 TTLL10
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain PERM1 MIR429 LOC107985728 LINC01342 HES4 NOC2L LOC284600 TTLL10-AS1 TNFRSF4 PLEKHN1 C1orf159 RNF223 FAM41C TNFRSF18 KLHL17 LOC100130417 LOC105378948 TTLL10 MIR200B MIR200A ISG15 SAMD11 SDF4 LOC100288175 AGRN
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TAS1R3 MIR429 CPTP LINC01342 B3GALT6 PUSL1 TTLL10-AS1 TNFRSF4 MIR6727 C1orf159 SCNN1D RNF223 FAM132A TNFRSF18 UBE2J2 LOC105378948 CPSF3L TTLL10 MIR6726 MIR200B ACAP3 MIR200A SDF4 LOC100288175 AGRN
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss PERM1 TAS1R3 LOC107985728 CPTP LOC100288069 TMEM240 HES4 B3GALT6 NOC2L LOC284600 PUSL1 LOC100287934 TTLL10-AS1 ATAD3C C1orf159 SCNN1D FAM132A SLC35E2 FAM41C KLHL17 ATAD3B SSU72 MIR6726 DVL1 MIR200B FNDC10 MMP23A SAMD11 SDF4 LOC100288175 AGRN ATAD3A TMEM88B MIR429 CCNL2 LINC00115 MRPL20 FAM87B LOC102724312 SLC35E2B LINC01342 ANKRD65 AURKAIP1 NADK VWA1 LOC148413 TNFRSF4 PLEKHN1 MIR6727 MXRA8 LOC107985729 RNF223 TNFRSF18 UBE2J2 MIB2 LOC100130417 LOC105378948 CPSF3L TTLL10 MMP23B ACAP3 MIR200A CDK11A ISG15 MIR6808 CDK11B LINC01128
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss PERM1 MIR429 LINC00115 LOC107985728 FAM87B LINC01342 HES4 B3GALT6 NOC2L LOC284600 TTLL10-AS1 TNFRSF4 PLEKHN1 C1orf159 RNF223 FAM132A FAM41C TNFRSF18 KLHL17 UBE2J2 LOC100130417 LOC105378948 TTLL10 MIR200B MIR200A ISG15 SAMD11 SDF4 LINC01128 LOC100288175 AGRN
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TAS1R3 MIR429 CCNL2 MRPL20 CPTP LOC102724312 LINC01342 TMEM240 ANKRD65 AURKAIP1 B3GALT6 PUSL1 VWA1 LOC148413 TTLL10-AS1 TNFRSF4 ATAD3C MIR6727 C1orf159 SCNN1D MXRA8 LOC107985729 FAM132A TNFRSF18 ATAD3B UBE2J2 MIB2 CPSF3L TTLL10 SSU72 MIR6726 DVL1 MMP23B MIR200B ACAP3 FNDC10 MIR200A MIR6808 CDK11B SDF4 ATAD3A TMEM88B
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain PERM1 TAS1R3 MIR429 CCNL2 LOC107985728 MRPL20 CPTP LINC01342 ANKRD65 HES4 AURKAIP1 B3GALT6 NOC2L LOC284600 PUSL1 LOC148413 TTLL10-AS1 TNFRSF4 PLEKHN1 MIR6727 C1orf159 SCNN1D MXRA8 RNF223 FAM132A TNFRSF18 KLHL17 UBE2J2 LOC100130417 LOC105378948 CPSF3L TTLL10 MIR6726 DVL1 MIR200B ACAP3 MIR200A ISG15 SAMD11 MIR6808 SDF4 LOC100288175 AGRN TMEM88B
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion PERM1 C1orf159 MIR429 RNF223 TNFRSF18 LINC01342 KLHL17 LOC105378948 TTLL10 HES4 MIR200B NOC2L MIR200A ISG15 SAMD11 TTLL10-AS1 TNFRSF4 SDF4 PLEKHN1 LOC100288175 AGRN
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain SCNN1D MIR429 FAM132A TNFRSF18 UBE2J2 CPSF3L TTLL10 MIR6726 B3GALT6 MIR200B ACAP3 MIR200A PUSL1 TTLL10-AS1 TNFRSF4 SDF4 MIR6727

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