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See other PPT2 CNV Assays ›
Gene Symbol
PPT2
Assay Reference Genome
Location

Chr.6:32163339 on build GRCh38
Cytoband
6p21.32
Assay ID Hs00246264_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 9374

Gene Name:

 palmitoyl-protein thioesterase 2

Gene Aliases:

 C6orf8, G14, PPT-2

Location:

 Chr.6:32153452-32163681 on Build GRCh38

Assay Gene Location:

 Within Exon 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PPT2 NM_001204103.1 9 1702 NP_001191032.1
NM_005155.6 9 1712 NP_005146.4
NM_138717.2 9 1491 NP_619731.2
AF020543.1 9 1657 AAB80730.1
AI472281.1 1 352
AL110128.1 9 1419 CAB53659.1
BC001355.2 9 1526 AAH01355.1
Y17958.1 9 1606 CAB46981.1

Target Gene Details

Entrez Gene ID:

 100532746

Gene Name:

 PPT2-EGFL8 readthrough (NMD candidate)

Gene Aliases:

 -

Location:

 Chr.6:32153999-32168285 on Build GRCh38

Assay Gene Location:

 Within Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PPT2-EGFL8 NR_037861.1
AB209572.1 BAD92809.1
AF020544.1 AAB80731.1
AK290473.1
AK296648.1
AK307427.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss MIR6833 AGPAT1 TNXB FKBPL PRRT1 PBX2 PPT2 GPSM3 EGFL8 ATF6B PPT2-EGFL8 AGER MIR6721 NOTCH4 RNF5 LOC100507547
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss STK19 C4A PRRT1 GPSM3 SLC44A4 C4B ZBTB12 AGER HSPA1A HLA-DQA1 HLA-DRB6 NOTCH4 LOC100507547 HLA-DQB1 HSPA1B C2-AS1 BTNL2 C6orf10 MIR6833 LOC101929163 HLA-DRB1 HLA-DRA C2 PPT2-EGFL8 EHMT2 MIR6721 HLA-DRB5 SKIV2L AGPAT1 NELFE FKBPL PBX2 EGFL8 CFB SNORD52 C6orf48 MIR1236 NEU1 HLA-DQB1-AS1 HCG23 TNXB TNXA DXO PPT2 ATF6B SNORD48 CYP21A1P CYP21A2 RNF5
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss AGPAT1 C4A FKBPL PRRT1 PBX2 GPSM3 EGFL8 C4B AGER HLA-DQB2 HLA-DQA1 MIR3135B HLA-DRB6 NOTCH4 LOC100507547 HLA-DQB1 BTNL2 HLA-DQB1-AS1 C6orf10 MIR6833 LOC101929163 HCG23 TNXB HLA-DRB1 TNXA PPT2 HLA-DRA HLA-DQA2 ATF6B PPT2-EGFL8 MIR6721 CYP21A1P CYP21A2 HLA-DRB5 RNF5
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss SKIV2L STK19 AGPAT1 C4A NELFE FKBPL PRRT1 PBX2 GPSM3 EGFL8 C4B CFB AGER MIR1236 NOTCH4 LOC100507547 C2-AS1 MIR6833 TNXB TNXA DXO PPT2 ATF6B C2 PPT2-EGFL8 MIR6721 CYP21A1P CYP21A2 RNF5
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion NFKBIL1 STK19 LY6G5C C4A MIR4646 ATP6V1G2 NCR3 PRRT1 GPSM3 LTA SLC44A4 C4B SAPCD1 ZBTB12 LOC102725068 CLIC1 LY6G6E AGER HSPA1A MSH5 DDX39B LY6G6D TNF HLA-DRB6 NOTCH4 C6orf47 LOC100507547 LSM2 SNORA38 HSPA1B C2-AS1 BTNL2 C6orf10 MIR6833 LST1 LOC101929163 HLA-DRB1 HLA-DRA C2 PPT2-EGFL8 MICB EHMT2 MIR6721 GPANK1 HLA-DRB5 APOM DDAH2 LY6G5B HCG26 LY6G6C SKIV2L SNORD84 AGPAT1 NELFE FKBPL PBX2 EGFL8 ATP6V1G2-DDX39B CFB CSNK2B LTB LY6G6F SNORD52 C6orf48 C6orf25 HSPA1L HCP5 DDX39B-AS1 LOC100287329 AIF1 MIR1236 NEU1 ABHD16A BAG6 SAPCD1-AS1 HCG23 TNXB MSH5-SAPCD1 TNXA DXO PPT2 PRRC2A MCCD1 ATF6B VWA7 MIR6832 SNORD48 CYP21A1P VARS CYP21A2 SNORD117 RNF5
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion NFKBIL1 STK19 HLA-DPB2 LY6G5C SYNGAP1 NCR3 GPSM3 LTA SAPCD1 CLIC1 SLC39A7 HSPA1A HLA-DOB HLA-DQB2 HLA-DQA1 MSH5 HSD17B8 LY6G6D MIR3135B RXRB TNF HLA-DRB6 C6orf47 LSM2 HLA-DQB1 C2-AS1 C6orf10 MIR6833 MIR5004 HLA-DRB1 PFDN6 HLA-DOA C2 PPT2-EGFL8 EHMT2 MIR6873 HLA-DRB5 DDAH2 HCG26 LY6G6C SKIV2L HLA-DPA1 FKBPL EGFL8 ATP6V1G2-DDX39B TAP2 CFB CSNK2B LTB SNORD52 C6orf48 C6orf25 LOC100287329 AIF1 HLA-DMA HLA-DMB NEU1 ABHD16A HLA-DQB1-AS1 SAPCD1-AS1 BRD2 HCG23 TNXB MSH5-SAPCD1 TNXA DXO PPT2 PRRC2A MCCD1 HLA-DQA2 ATF6B PSMB9 VPS52 MIR6832 SNORD48 CYP21A1P CYP21A2 RNF5 ZBTB9 TAP1 C4A MIR4646 ATP6V1G2 PRRT1 PSMB8-AS1 SLC44A4 PSMB8 C4B ZBTB12 LOC102725068 LY6G6E AGER DDX39B NOTCH4 LOC100507547 SNORA38 HSPA1B BTNL2 PHF1 COL11A2 LST1 LOC101929163 RGL2 TAPBP HCG24 HLA-DRA LOC100294145 DAXX PPP1R2P1 MICB MIR6721 GPANK1 HCG25 HLA-DPB1 APOM LY6G5B RPS18 SNORD84 AGPAT1 NELFE KIFC1 PBX2 LY6G6F HSPA1L HCP5 DDX39B-AS1 MIR1236 B3GALT4 BAG6 MIR6834 WDR46 RING1 VWA7 ZBTB22 MIR219A1 VARS CUTA SNORD117
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss MIR6833 AGPAT1 TNXB FKBPL PRRT1 PBX2 PPT2 GPSM3 EGFL8 ATF6B PPT2-EGFL8 AGER MIR6721 NOTCH4 RNF5 LOC100507547
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion NFKBIL1 STK19 HLA-DPB2 LY6G5C SYNGAP1 NCR3 GPSM3 LTA SAPCD1 CLIC1 SLC39A7 HSPA1A HLA-DOB HLA-DQB2 HLA-DQA1 MSH5 HSD17B8 LY6G6D MIR3135B RXRB TNF HLA-DRB6 C6orf47 LSM2 HLA-DQB1 C2-AS1 C6orf10 MIR6833 MIR5004 HLA-DRB1 PFDN6 HLA-DOA C2 PPT2-EGFL8 EHMT2 MIR6873 HLA-DRB5 DDAH2 HCG26 LY6G6C SKIV2L HLA-DPA1 FKBPL EGFL8 ATP6V1G2-DDX39B TAP2 CFB CSNK2B LTB SNORD52 C6orf48 C6orf25 LOC100287329 AIF1 HLA-DMA HLA-DMB NEU1 ABHD16A HLA-DQB1-AS1 SAPCD1-AS1 BRD2 HCG23 TNXB MSH5-SAPCD1 TNXA DXO PPT2 PRRC2A MCCD1 HLA-DQA2 ATF6B PSMB9 VPS52 MIR6832 SNORD48 CYP21A1P CYP21A2 RNF5 ZBTB9 TAP1 C4A MIR4646 ATP6V1G2 PRRT1 PSMB8-AS1 SLC44A4 PSMB8 C4B ZBTB12 LOC102725068 LY6G6E AGER DDX39B NOTCH4 LOC100507547 SNORA38 HSPA1B BTNL2 PHF1 COL11A2 LST1 LOC101929163 RGL2 TAPBP HCG24 HLA-DRA LOC100294145 DAXX PPP1R2P1 MICB MIR6721 GPANK1 HCG25 HLA-DPB1 APOM LY6G5B RPS18 SNORD84 AGPAT1 NELFE KIFC1 PBX2 LY6G6F HSPA1L HCP5 DDX39B-AS1 MIR1236 B3GALT4 BAG6 MIR6834 WDR46 RING1 VWA7 ZBTB22 MIR219A1 VARS CUTA SNORD117
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss NFKBIL1 STK19 LY6G5C C4A MIR4646 MIR6891 ATP6V1G2 NCR3 PRRT1 GPSM3 LTA SLC44A4 C4B SAPCD1 ZBTB12 LOC102725068 CLIC1 LY6G6E AGER HSPA1A MSH5 DDX39B LY6G6D TNF NOTCH4 C6orf47 LOC100507547 LSM2 SNORA38 HSPA1B C2-AS1 BTNL2 C6orf10 MIR6833 LST1 LOC101929163 HLA-DRA C2 PPT2-EGFL8 MICB EHMT2 MIR6721 GPANK1 APOM DDAH2 LY6G5B HCG26 LY6G6C SKIV2L SNORD84 AGPAT1 NELFE FKBPL PBX2 EGFL8 ATP6V1G2-DDX39B MICA CFB CSNK2B LTB LY6G6F SNORD52 C6orf48 C6orf25 HSPA1L HCP5 DDX39B-AS1 LOC100287329 AIF1 HLA-B MIR1236 NEU1 ABHD16A BAG6 SAPCD1-AS1 HCG23 TNXB MSH5-SAPCD1 TNXA DXO PPT2 PRRC2A MCCD1 ATF6B VWA7 MIR6832 SNORD48 CYP21A1P VARS CYP21A2 SNORD117 RNF5

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