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See other DXO CNV Assays ›
Gene Symbol
DXO
Assay Reference Genome
Location

Chr.6:31972261 on build GRCh38
Cytoband
6p21.33
Assay ID Hs00288611_cn
Size
Availability Made To Order
Catalog # 4400291
Price 4,505.00
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4505.0
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Assay Details

Target Gene Details

Entrez Gene ID:

 1797

Gene Name:

 decapping exoribonuclease

Gene Aliases:

 DOM3L, DOM3Z, NG6, RAI1

Location:

 Chr.6:31969811-31972290 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
DXO NM_005510.3 NP_005501.2
XM_006715005.3 XP_006715068.1
BC019083.2 AAH19083.1

Target Gene Details

Entrez Gene ID:

 8859

Gene Name:

 serine/threonine kinase 19

Gene Aliases:

 D6S60, D6S60E, G11, HLA-RP1, RP1

Location:

 Chr.6:31971175-31981446 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
STK19 NM_004197.1 NP_004188.1
NM_032454.1 NP_115830.1
NR_026717.1 2 493
AK302111.1 2 507
AK303438.1
BC110347.1 2 493 AAI10348.1
BC121128.1 1 327
BC121129.1 1 326
BC143833.1 1 363
L26260.1 AAA20122.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv601970 Chr.6:31970674 - 31980252 on Build GRCh38 Loss DXO STK19
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss NEU1 CFB BTNL2 DXO EHMT2 HLA-DQB1-AS1 STK19 NELFE SLC44A4 ZBTB12 NOTCH4 RNF5 C2-AS1 PPT2-EGFL8 LOC101929163 FKBPL HLA-DRB1 TNXA SNORD48 GPSM3 PRRT1 TNXB C6orf48 HLA-DRA AGPAT1 HCG23 C4A SNORD52 HLA-DQB1 MIR1236 SKIV2L HLA-DQA1 ATF6B HSPA1B EGFL8 MIR6833 C6orf10 HSPA1A MIR6721 AGER LOC100507547 CYP21A2 HLA-DRB5 CYP21A1P HLA-DRB6 PBX2 C2 PPT2 C4B
nsv601971 Chr.6:31971488 - 32046679 on Build GRCh38 Gain CYP21A2 DXO TNXB CYP21A1P STK19 C4B C4A TNXA
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss CFB DXO MIR1236 SKIV2L STK19 NELFE NOTCH4 ATF6B RNF5 C2-AS1 EGFL8 MIR6833 MIR6721 PPT2-EGFL8 AGER LOC100507547 FKBPL CYP21A2 CYP21A1P TNXA PBX2 GPSM3 PRRT1 TNXB C2 PPT2 AGPAT1 C4B C4A
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion LY6G6D NEU1 CFB HCG26 BTNL2 DXO EHMT2 PRRC2A STK19 NELFE SLC44A4 ZBTB12 NOTCH4 SNORD117 MICB LST1 RNF5 C2-AS1 PPT2-EGFL8 LOC101929163 FKBPL LY6G6E DDX39B-AS1 NCR3 DDAH2 ATP6V1G2 C6orf25 HLA-DRB1 ATP6V1G2-DDX39B MSH5-SAPCD1 TNXA SNORD84 TNF HSPA1L APOM DDX39B SNORD48 GPSM3 PRRT1 TNXB C6orf48 HLA-DRA AGPAT1 HCG23 MCCD1 C4A SNORD52 MSH5 MIR4646 CLIC1 SNORA38 MIR1236 LY6G6C SKIV2L GPANK1 ATF6B LOC100287329 HSPA1B CSNK2B SAPCD1 EGFL8 MIR6833 C6orf10 LTB HSPA1A MIR6721 LTA AGER LY6G5C LY6G5B LOC100507547 CYP21A2 ABHD16A HLA-DRB5 SAPCD1-AS1 C6orf47 MIR6832 LSM2 HCP5 CYP21A1P HLA-DRB6 VARS BAG6 PBX2 AIF1 LOC102725068 NFKBIL1 C2 PPT2 LY6G6F C4B VWA7
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion LY6G6D NEU1 HLA-DOA CFB BTNL2 EHMT2 PRRC2A HLA-DQB1-AS1 SLC44A4 MICB LST1 PPT2-EGFL8 FKBPL LY6G6E HLA-DRB1 COL11A2 ATP6V1G2-DDX39B MSH5-SAPCD1 DAXX PSMB8-AS1 LOC100294145 TNF APOM PSMB9 GPSM3 PRRT1 HLA-DQA2 AGPAT1 PSMB8 HCG24 MIR219A1 MIR4646 HLA-DQB1 MIR1236 LY6G6C SKIV2L HLA-DQA1 RING1 PPP1R2P1 ATF6B HLA-DQB2 SAPCD1 LTB MIR6721 HCG25 TAPBP LTA LOC100507547 CYP21A2 HSD17B8 ABHD16A TAP2 HLA-DMB HLA-DRB5 C6orf47 MIR6832 LSM2 VARS AIF1 LOC102725068 HLA-DOB NFKBIL1 C2 C4B RGL2 KIFC1 HCG26 DXO PHF1 ZBTB9 SYNGAP1 STK19 NELFE ZBTB12 NOTCH4 SNORD117 RNF5 WDR46 C2-AS1 LOC101929163 DDX39B-AS1 MIR3135B NCR3 DDAH2 ATP6V1G2 MIR6834 C6orf25 HLA-DPB1 RPS18 TNXA SNORD84 HLA-DPB2 HSPA1L DDX39B SNORD48 PFDN6 ZBTB22 TNXB C6orf48 HLA-DRA HCG23 MCCD1 C4A CUTA MIR5004 SNORD52 MSH5 CLIC1 SNORA38 GPANK1 VPS52 MIR6873 LOC100287329 HSPA1B CSNK2B EGFL8 MIR6833 C6orf10 HSPA1A AGER LY6G5C LY6G5B SAPCD1-AS1 HCP5 CYP21A1P HLA-DRB6 BAG6 HLA-DPA1 RXRB PBX2 SLC39A7 BRD2 HLA-DMA PPT2 B3GALT4 TAP1 LY6G6F VWA7
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss LY6G6D NEU1 CFB HCG26 DXO EHMT2 PRRC2A STK19 NELFE SLC44A4 ZBTB12 SNORD117 MICB LST1 C2-AS1 LY6G6E DDX39B-AS1 HLA-B NCR3 DDAH2 ATP6V1G2 C6orf25 ATP6V1G2-DDX39B MSH5-SAPCD1 TNXA SNORD84 TNF HSPA1L APOM DDX39B SNORD48 TNXB C6orf48 MIR6891 MCCD1 C4A SNORD52 MSH5 MIR4646 CLIC1 SNORA38 MIR1236 LY6G6C SKIV2L GPANK1 LOC100287329 HSPA1B CSNK2B SAPCD1 LTB HSPA1A LTA LY6G5C LY6G5B CYP21A2 ABHD16A SAPCD1-AS1 C6orf47 MIR6832 LSM2 HCP5 CYP21A1P VARS BAG6 AIF1 LOC102725068 NFKBIL1 C2 LY6G6F C4B VWA7 MICA
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion LY6G6D NEU1 HLA-DOA CFB BTNL2 EHMT2 PRRC2A HLA-DQB1-AS1 SLC44A4 MICB LST1 PPT2-EGFL8 FKBPL LY6G6E HLA-DRB1 COL11A2 ATP6V1G2-DDX39B MSH5-SAPCD1 DAXX PSMB8-AS1 LOC100294145 TNF APOM PSMB9 GPSM3 PRRT1 HLA-DQA2 AGPAT1 PSMB8 HCG24 MIR219A1 MIR4646 HLA-DQB1 MIR1236 LY6G6C SKIV2L HLA-DQA1 RING1 PPP1R2P1 ATF6B HLA-DQB2 SAPCD1 LTB MIR6721 HCG25 TAPBP LTA LOC100507547 CYP21A2 HSD17B8 ABHD16A TAP2 HLA-DMB HLA-DRB5 C6orf47 MIR6832 LSM2 VARS AIF1 LOC102725068 HLA-DOB NFKBIL1 C2 C4B RGL2 KIFC1 HCG26 DXO PHF1 ZBTB9 SYNGAP1 STK19 NELFE ZBTB12 NOTCH4 SNORD117 RNF5 WDR46 C2-AS1 LOC101929163 DDX39B-AS1 MIR3135B NCR3 DDAH2 ATP6V1G2 MIR6834 C6orf25 HLA-DPB1 RPS18 TNXA SNORD84 HLA-DPB2 HSPA1L DDX39B SNORD48 PFDN6 ZBTB22 TNXB C6orf48 HLA-DRA HCG23 MCCD1 C4A CUTA MIR5004 SNORD52 MSH5 CLIC1 SNORA38 GPANK1 VPS52 MIR6873 LOC100287329 HSPA1B CSNK2B EGFL8 MIR6833 C6orf10 HSPA1A AGER LY6G5C LY6G5B SAPCD1-AS1 HCP5 CYP21A1P HLA-DRB6 BAG6 HLA-DPA1 RXRB PBX2 SLC39A7 BRD2 HLA-DMA PPT2 B3GALT4 TAP1 LY6G6F VWA7
nsv830628 Chr.6:31919777 - 31979823 on Build GRCh38 Loss CFB DXO C2 C2-AS1 MIR1236 SKIV2L STK19 NELFE
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss LY6G6D NEU1 CFB HCG26 BTNL2 DXO EHMT2 PRRC2A STK19 NELFE SLC44A4 ZBTB12 NOTCH4 SNORD117 MICB LST1 RNF5 C2-AS1 PPT2-EGFL8 LOC101929163 FKBPL LY6G6E DDX39B-AS1 HLA-B NCR3 DDAH2 ATP6V1G2 C6orf25 ATP6V1G2-DDX39B MSH5-SAPCD1 TNXA SNORD84 TNF HSPA1L APOM DDX39B SNORD48 GPSM3 PRRT1 TNXB C6orf48 HLA-DRA AGPAT1 HCG23 MIR6891 MCCD1 C4A SNORD52 MSH5 MIR4646 CLIC1 SNORA38 MIR1236 LY6G6C SKIV2L GPANK1 ATF6B LOC100287329 HSPA1B CSNK2B SAPCD1 EGFL8 MIR6833 C6orf10 LTB HSPA1A MIR6721 LTA AGER LY6G5C LY6G5B LOC100507547 CYP21A2 ABHD16A SAPCD1-AS1 C6orf47 MIR6832 LSM2 HCP5 CYP21A1P VARS BAG6 PBX2 AIF1 LOC102725068 NFKBIL1 C2 PPT2 LY6G6F C4B VWA7 MICA
nsv5247 Chr.6:31957962 - 32055439 on Build GRCh38 Deletion CYP21A2 DXO TNXB CYP21A1P SKIV2L STK19 C4B NELFE C4A TNXA

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