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See other DXO CNV Assays ›
Gene Symbol
DXO
Assay Reference Genome
Location

Chr.6:31972261 on build GRCh38
Cytoband
6p21.33
Assay ID Hs00288611_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 1797

Gene Name:

 decapping exoribonuclease

Gene Aliases:

 DOM3L, DOM3Z, NG6, RAI1

Location:

 Chr.6:31969811-31972290 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
DXO NM_005510.3 NP_005501.2
XM_006715005.3 XP_006715068.1
BC019083.2 AAH19083.1

Target Gene Details

Entrez Gene ID:

 8859

Gene Name:

 serine/threonine kinase 19

Gene Aliases:

 D6S60, D6S60E, G11, HLA-RP1, RP1

Location:

 Chr.6:31971175-31981446 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
STK19 NM_004197.1 NP_004188.1
NM_032454.1 NP_115830.1
NR_026717.1 2 493
AK302111.1 2 507
AK303438.1
BC110347.1 2 493 AAI10348.1
BC121128.1 1 327
BC121129.1 1 326
BC143833.1 1 363
L26260.1 AAA20122.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv601970 Chr.6:31970674 - 31980252 on Build GRCh38 Loss STK19 DXO
nsv601971 Chr.6:31971488 - 32046679 on Build GRCh38 Gain CYP21A2 TNXA STK19 DXO C4B CYP21A1P C4A TNXB
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss LOC101929163 NOTCH4 SLC44A4 C2-AS1 C4B BTNL2 FKBPL MIR1236 STK19 MIR6721 HLA-DQA1 C4A EHMT2 PRRT1 AGER HLA-DRA HCG23 NELFE SNORD48 HLA-DRB5 NEU1 LOC100507547 SNORD52 ATF6B C6orf10 PBX2 HLA-DQB1-AS1 HSPA1B RNF5 PPT2-EGFL8 PPT2 EGFL8 CYP21A2 TNXA SKIV2L AGPAT1 C6orf48 MIR6833 GPSM3 HSPA1A DXO ZBTB12 TNXB HLA-DRB1 CFB CYP21A1P HLA-DQB1 C2 HLA-DRB6
nsv428141 Chr.6:31903735 - 32125066 on Build GRCh38 Gain+Loss DXO C2-AS1 C4B NELFE TNXB MIR1236 CYP21A2 TNXA STK19 SKIV2L CFB ATF6B CYP21A1P C4A C2
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion LOC101929163 LTA NOTCH4 SLC44A4 C2-AS1 LY6G6C C4B BTNL2 LY6G5C NFKBIL1 CSNK2B DDX39B FKBPL MIR1236 STK19 HCP5 MSH5-SAPCD1 LST1 VWA7 MIR6721 LY6G5B SNORA38 LOC102725068 C4A CLIC1 EHMT2 PRRT1 SNORD117 LOC100287329 AGER MSH5 HLA-DRA HCG23 NELFE SNORD48 HLA-DRB5 TNF NEU1 LOC100507547 SNORD52 HSPA1L ATF6B C6orf10 C6orf25 MCCD1 PBX2 SNORD84 SAPCD1 HSPA1B RNF5 PPT2-EGFL8 ATP6V1G2-DDX39B GPANK1 PPT2 ATP6V1G2 PRRC2A SAPCD1-AS1 DDX39B-AS1 EGFL8 CYP21A2 TNXA DDAH2 LY6G6D C6orf47 SKIV2L AGPAT1 C6orf48 MICB ABHD16A HCG26 MIR6833 MIR4646 GPSM3 LSM2 LY6G6F HSPA1A DXO ZBTB12 LY6G6E TNXB NCR3 HLA-DRB1 APOM AIF1 CFB LTB BAG6 MIR6832 VARS CYP21A1P C2 HLA-DRB6
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss LTA SLC44A4 C2-AS1 LY6G6C C4B LY6G5C NFKBIL1 CSNK2B DDX39B MIR1236 STK19 HCP5 MSH5-SAPCD1 LST1 VWA7 LY6G5B SNORA38 LOC102725068 C4A CLIC1 EHMT2 SNORD117 LOC100287329 MSH5 NELFE SNORD48 HLA-B TNF NEU1 MIR6891 SNORD52 HSPA1L C6orf25 MCCD1 SNORD84 SAPCD1 HSPA1B ATP6V1G2-DDX39B GPANK1 ATP6V1G2 PRRC2A SAPCD1-AS1 DDX39B-AS1 CYP21A2 TNXA DDAH2 LY6G6D C6orf47 SKIV2L C6orf48 MICB ABHD16A HCG26 MICA MIR4646 LSM2 LY6G6F HSPA1A DXO ZBTB12 LY6G6E TNXB NCR3 APOM AIF1 CFB LTB BAG6 MIR6832 VARS CYP21A1P C2
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion MIR6873 LOC101929163 KIFC1 LTA HLA-DMB SLC44A4 BTNL2 STK19 HLA-DOB LST1 MIR5004 HLA-DQB2 PPP1R2P1 HLA-DQA1 RPS18 LY6G5B LOC102725068 CUTA LOC100294145 C4A EHMT2 PRRT1 SNORD117 RXRB AGER MSH5 HLA-DRA ZBTB22 WDR46 HCG23 SNORD48 PSMB8-AS1 SNORD52 HLA-DMA ATF6B C6orf25 PBX2 SAPCD1 PHF1 HLA-DPA1 HSPA1B RNF5 ATP6V1G2-DDX39B ATP6V1G2 DDX39B-AS1 MIR219A1 HCG25 LY6G6D SKIV2L C6orf48 MICB MIR6833 MIR4646 LY6G6F TAP1 NCR3 APOM CFB HLA-DPB2 LTB BAG6 HLA-DQA2 MIR6832 NOTCH4 C2-AS1 LY6G6C C4B LY6G5C NFKBIL1 CSNK2B DDX39B FKBPL MIR1236 HCP5 MSH5-SAPCD1 SLC39A7 VWA7 MIR6721 SNORA38 MIR3135B CLIC1 ZBTB9 LOC100287329 RING1 RGL2 NELFE HLA-DRB5 TNF NEU1 LOC100507547 COL11A2 B3GALT4 HSPA1L VPS52 C6orf10 BRD2 DAXX MCCD1 SNORD84 TAPBP SYNGAP1 HLA-DQB1-AS1 MIR6834 HLA-DOA PPT2-EGFL8 TAP2 GPANK1 PPT2 PRRC2A SAPCD1-AS1 EGFL8 CYP21A2 TNXA DDAH2 C6orf47 AGPAT1 HCG24 PSMB9 ABHD16A HCG26 HLA-DPB1 GPSM3 LSM2 HSPA1A DXO ZBTB12 PFDN6 LY6G6E PSMB8 HSD17B8 TNXB HLA-DRB1 AIF1 VARS CYP21A1P HLA-DQB1 C2 HLA-DRB6
nsv830628 Chr.6:31919777 - 31979823 on Build GRCh38 Loss MIR1236 STK19 DXO SKIV2L C2-AS1 CFB NELFE C2
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion MIR6873 LOC101929163 KIFC1 LTA HLA-DMB SLC44A4 BTNL2 STK19 HLA-DOB LST1 MIR5004 HLA-DQB2 PPP1R2P1 HLA-DQA1 RPS18 LY6G5B LOC102725068 CUTA LOC100294145 C4A EHMT2 PRRT1 SNORD117 RXRB AGER MSH5 HLA-DRA ZBTB22 WDR46 HCG23 SNORD48 PSMB8-AS1 SNORD52 HLA-DMA ATF6B C6orf25 PBX2 SAPCD1 PHF1 HLA-DPA1 HSPA1B RNF5 ATP6V1G2-DDX39B ATP6V1G2 DDX39B-AS1 MIR219A1 HCG25 LY6G6D SKIV2L C6orf48 MICB MIR6833 MIR4646 LY6G6F TAP1 NCR3 APOM CFB HLA-DPB2 LTB BAG6 HLA-DQA2 MIR6832 NOTCH4 C2-AS1 LY6G6C C4B LY6G5C NFKBIL1 CSNK2B DDX39B FKBPL MIR1236 HCP5 MSH5-SAPCD1 SLC39A7 VWA7 MIR6721 SNORA38 MIR3135B CLIC1 ZBTB9 LOC100287329 RING1 RGL2 NELFE HLA-DRB5 TNF NEU1 LOC100507547 COL11A2 B3GALT4 HSPA1L VPS52 C6orf10 BRD2 DAXX MCCD1 SNORD84 TAPBP SYNGAP1 HLA-DQB1-AS1 MIR6834 HLA-DOA PPT2-EGFL8 TAP2 GPANK1 PPT2 PRRC2A SAPCD1-AS1 EGFL8 CYP21A2 TNXA DDAH2 C6orf47 AGPAT1 HCG24 PSMB9 ABHD16A HCG26 HLA-DPB1 GPSM3 LSM2 HSPA1A DXO ZBTB12 PFDN6 LY6G6E PSMB8 HSD17B8 TNXB HLA-DRB1 AIF1 VARS CYP21A1P HLA-DQB1 C2 HLA-DRB6
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss LOC101929163 LTA NOTCH4 SLC44A4 C2-AS1 LY6G6C C4B BTNL2 LY6G5C NFKBIL1 CSNK2B DDX39B FKBPL MIR1236 STK19 HCP5 MSH5-SAPCD1 LST1 VWA7 MIR6721 LY6G5B SNORA38 LOC102725068 C4A CLIC1 EHMT2 PRRT1 SNORD117 LOC100287329 AGER MSH5 HLA-DRA HCG23 NELFE SNORD48 HLA-B TNF NEU1 LOC100507547 MIR6891 SNORD52 HSPA1L ATF6B C6orf10 C6orf25 MCCD1 PBX2 SNORD84 SAPCD1 HSPA1B RNF5 PPT2-EGFL8 ATP6V1G2-DDX39B GPANK1 PPT2 ATP6V1G2 PRRC2A SAPCD1-AS1 DDX39B-AS1 EGFL8 CYP21A2 TNXA DDAH2 LY6G6D C6orf47 SKIV2L AGPAT1 C6orf48 MICB ABHD16A HCG26 MIR6833 MICA MIR4646 GPSM3 LSM2 LY6G6F HSPA1A DXO ZBTB12 LY6G6E TNXB NCR3 APOM AIF1 CFB LTB BAG6 MIR6832 VARS CYP21A1P C2
nsv284 Chr.6:31957962 - 32028944 on Build GRCh38 Deletion TNXA STK19 DXO SKIV2L C4B NELFE CYP21A1P C4A

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