Genomic Map
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Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
| NM_001288792.1 | 3 | 478 | NP_001275721.1 | |
| NM_001288793.1 | NP_001275722.1 | |||
| NM_198481.3 | 3 | 478 | NP_940883.2 | |
| NR_110142.1 | 3 | 478 | ||
| XM_011526845.1 | 3 | 491 | XP_011525147.1 | |
| XM_011526846.1 | 3 | 491 | XP_011525148.1 | |
| XM_011526847.1 | 3 | 491 | XP_011525149.1 | |
| XM_011526848.1 | 3 | 491 | XP_011525150.1 | |
| XM_011526849.1 | 3 | 491 | XP_011525151.1 | |
| XM_017026666.1 | 3 | 491 | XP_016882155.1 | |
| AY358542.1 | 3 | 487 | AAQ88906.1 | |
| BC100943.2 | 3 | 455 | AAI00944.1 | |
| BQ446114.1 | 7 | 555 | ||
| DQ479397.1 | 3 | 319 | ||
| FJ584316.1 | 3 | 313 | ||
| FJ584317.1 | 3 | 313 | ||
| FJ584318.1 | 3 | 313 | ||
| FJ584319.1 | ||||
| FJ584320.1 | ||||
| FJ882051.1 | 3 | 313 | ||
| FN398145.1 | 3 | 306 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv458782 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain |
 TARM1
CACNG8
VSTM1
CACNG6
MIR935
|
| nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion |
TFPT
TARM1
NDUFA3
PRPF31
VSTM1
OSCAR
|
| nsv182 | Chr.19:54050737 - 54097924 on Build GRCh38 | Deletion |
TARM1
VSTM1
OSCAR
|
| nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain |
CACNG8
CACNG7
VSTM1
CACNG6
MIR935
|
| nsv9750 | Chr.19:54049927 - 54058628 on Build GRCh38 | Gain |
VSTM1
|
| esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion |
RPS9
NDUFA3
CNOT3
MIR520B
LOC284379
MIR371A
MIR519C
MIR527
FAM90A27P
MIR520G
MIR372
MIR516A2
ZNF845
MIR517C
ZNF761
NLRP12
MIR524
MIR520H
CACNG8
CACNG6
MIR1283-2
MIR520E
MIR521-2
MIR518E
LILRB2
MIR520F
MIR516A1
LILRA5
MIR526B
MIR525
MIR520A
MIR518D
ZNF665
MBOAT7
MIR512-1
MIR518A1
MIR520C
MIR523
MIR520D
VN1R4
BIRC8
TMC4
TSEN34
LENG1
MIR371B
DPRX
TPM3P9
MIR512-2
MIR515-2
VN1R2
MIR519E
MIR4752
MIR1283-1
ZNF813
LILRB3
MIR517B
MIR373
MIR519A1
LILRB5
MIR526A2
TARM1
ZNF765
MIR518F
MYADM
MIR517A
MIR1323
ZNF677
MIR516B1
MIR521-1
MIR498
TFPT
MIR518A2
ZNF818P
CACNG7
MIR518C
MIR515-1
LOC105372457
PRKCG
PRPF31
LILRA6
MIR522
OSCAR
MIR519B
MIR519D
ZNF525
MIR518B
ZNF331
MIR519A2
MIR526A1
VSTM1
MIR516B2
MIR935
|
| dgv663e199 | Chr.19:54051591 - 54059132 on Build GRCh38 | Deletion |
VSTM1
|
| esv3644780 | Chr.19:54057724 - 54066399 on Build GRCh38 | Gain |
VSTM1
|
| nsv580137 | Chr.19:54053501 - 54058538 on Build GRCh38 | Loss |
VSTM1
|
| nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss |
TFPT
TARM1
NDUFA3
CACNG8
PRPF31
VSTM1
CACNG6
OSCAR
MIR935
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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