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Gene Symbol
CCHCR1
Assay Reference Genome
Location

Chr.6:31148651 on build GRCh38
Cytoband
6p21.33
Assay ID Hs00315515_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54535

Gene Name:

 coiled-coil alpha-helical rod protein 1

Gene Aliases:

 C6orf18, HCR, SBP

Location:

 Chr.6:31142439-31158238 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 11 - Exon 11
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CCHCR1 NM_001105563.1 NP_001099033.1
NM_001105564.1 NP_001099034.1
NM_019052.3 NP_061925.2
XM_011514702.2 XP_011513004.1
XM_011514703.1 XP_011513005.1
XM_011514704.2 XP_011513006.1
XM_011514705.1 XP_011513007.1
XM_017010961.1 XP_016866450.1
XM_017010962.1 XP_016866451.1
XM_017010963.1 XP_016866452.1
XM_017010964.1 XP_016866453.1
XM_017010965.1 XP_016866454.1
XM_017010966.1 XP_016866455.1
XM_017010967.1 XP_016866456.1
XM_017010968.1 XP_016866457.1
XM_017010969.1 XP_016866458.1
XM_017010970.1 XP_016866459.1
AB029331.1 BAA81890.1
AB112474.1 BAD05130.1
AB112475.1 BAD05131.1
AF216493.1 AAF74221.1
AK000204.1 BAA91007.1
AK000217.1 BAA91016.1
AK000533.1 BAA91236.1
AK289446.1
AK295494.1
AK310626.1
AY029160.1 AAK55759.1
BC110534.1 AAI10535.1
BC110535.1 AAI10536.1
CR457227.1 CAG33508.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv525933 Chr.6:31113428 - 31174468 on Build GRCh38 Loss CCHCR1 CDSN TCF19 POU5F1 PSORS1C2 PSORS1C1 PSORS1C3
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion HLA-L PPP1R11 MIR6891 HLA-B IFITM4P OR10C1 PSORS1C3 OR2H1 MAS1L C6orf136 MUC22 VARS2 POU5F1 HCG4B HCG18 ZFP57 MIR4640 OR11A1 MIR877 PPP1R18 LINC01015 DHX16 DPCR1 IER3 NRM LINC00243 TRIM39-RPP21 MICA HCG9 TRIM10 OR2H2 MRPS18B C6orf15 HLA-K SFTA2 TRIM31 HCG27 MDC1 OR14J1 PSORS1C1 DDR1 CCHCR1 LOC105375014 CDSN TRIM39 HCG22 UBD RPP21 SNORD32B OR5V1 LOC554223 TRIM31-AS1 HLA-H HLA-F-AS1 OR12D3 GNL1 HCG8 GABBR1 ZNRD1 HLA-J PRR3 HCG20 TRIM26 TUBB HLA-G TCF19 OR12D2 HCG17 PPP1R10 GTF2H4 HLA-A FLOT1 HLA-F LOC101929006 ABCF1 ZNRD1ASP HLA-C HLA-E OR2J2 HCG4 PSORS1C2 MUC21 MOG TRIM40 ATAT1 TRIM15 RNF39 MDC1-AS1
nsv601481 Chr.6:30454855 - 31316476 on Build GRCh38 Loss DDR1 CCHCR1 LOC105375014 CDSN HCG22 PSORS1C3 C6orf136 MUC22 VARS2 GNL1 POU5F1 PRR3 MIR4640 MIR877 PPP1R18 HCG20 TUBB TCF19 DHX16 PPP1R10 DPCR1 GTF2H4 FLOT1 IER3 NRM ABCF1 HLA-C HLA-E LINC00243 MRPS18B C6orf15 PSORS1C2 SFTA2 MUC21 HCG27 MDC1 ATAT1 PSORS1C1 MDC1-AS1
nsv428140 Chr.6:31060513 - 31494329 on Build GRCh38 Gain+Loss HCP5 CCHCR1 CDSN TCF19 LOC102725068 HCG26 MIR6891 HLA-B PSORS1C3 HLA-C MICA POU5F1 C6orf15 PSORS1C2 HCG27 PSORS1C1
nsv524061 Chr.6:31139310 - 31166166 on Build GRCh38 Loss CCHCR1 TCF19 POU5F1 PSORS1C2 PSORS1C1
esv33724 Chr.6:31146696 - 31150796 on Build GRCh38 Gain CCHCR1
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion HLA-L PPP1R11 LINC01556 OR2W1 IFITM4P OR10C1 PSORS1C3 OR2H1 MAS1L C6orf136 MUC22 VARS2 POU5F1 LINC00533 HCG4B HCG18 ZFP57 OR2B3 MIR4640 OR11A1 MIR877 PPP1R18 LINC01015 OR2J3 DHX16 HCG14 ZNF311 DPCR1 IER3 NRM HCG16 LINC00243 TRIM39-RPP21 HCG9 TRIM10 OR2H2 MRPS18B C6orf15 HLA-K SFTA2 TRIM31 HCG27 MDC1 OR14J1 PSORS1C1 DDR1 CCHCR1 LOC105375014 CDSN TRIM39 HCG22 UBD RPP21 SNORD32B OR5V1 LOC554223 TRIM27 TRIM31-AS1 HLA-H HLA-F-AS1 OR12D3 GNL1 HCG8 GABBR1 ZNRD1 HLA-J PRR3 HCG20 TRIM26 TUBB HLA-G TCF19 OR12D2 HCG17 PPP1R10 GTF2H4 LINC01623 HLA-A FLOT1 LOC100129636 HLA-F LOC101929006 ABCF1 ZNRD1ASP HLA-E OR2J2 HCG4 PSORS1C2 MUC21 MOG TRIM40 ATAT1 TRIM15 RNF39 MDC1-AS1
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion HLA-L PPP1R11 IFITM4P PSORS1C3 C6orf136 MUC22 VARS2 POU5F1 HCG4B HCG18 MIR4640 MIR877 PPP1R18 DHX16 DPCR1 IER3 NRM LINC00243 TRIM39-RPP21 HCG9 TRIM10 MRPS18B C6orf15 HLA-K SFTA2 TRIM31 HCG27 MDC1 PSORS1C1 DDR1 CCHCR1 LOC105375014 CDSN TRIM39 HCG22 RPP21 LOC554223 TRIM31-AS1 HLA-H HLA-F-AS1 GNL1 HCG8 ZNRD1 HLA-J PRR3 HCG20 TRIM26 TUBB HLA-G TCF19 HCG17 PPP1R10 GTF2H4 HLA-A FLOT1 HLA-F ABCF1 ZNRD1ASP HLA-C HLA-E HCG4 PSORS1C2 MUC21 TRIM40 ATAT1 TRIM15 RNF39 MDC1-AS1
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss HLA-L PPP1R11 PSORS1C3 C6orf136 MUC22 VARS2 POU5F1 HCG4B HCG18 MIR4640 MIR877 PPP1R18 DHX16 DPCR1 IER3 NRM LINC00243 TRIM39-RPP21 HCG9 TRIM10 MRPS18B C6orf15 HLA-K SFTA2 TRIM31 HCG27 MDC1 PSORS1C1 DDR1 CCHCR1 LOC105375014 CDSN TRIM39 HCG22 RPP21 TRIM31-AS1 HLA-H GNL1 HCG8 ZNRD1 HLA-J PRR3 HCG20 TRIM26 TUBB TCF19 HCG17 PPP1R10 GTF2H4 HLA-A FLOT1 ABCF1 ZNRD1ASP HLA-C HLA-E PSORS1C2 MUC21 TRIM40 ATAT1 TRIM15 RNF39 MDC1-AS1
esv2731791 Chr.6:30404802 - 31346410 on Build GRCh38 Deletion DDR1 CCHCR1 LOC105375014 CDSN HCG22 PSORS1C3 C6orf136 MUC22 VARS2 GNL1 POU5F1 PRR3 MIR4640 MIR877 PPP1R18 HCG20 TUBB TCF19 DHX16 PPP1R10 DPCR1 GTF2H4 FLOT1 IER3 NRM ABCF1 HLA-C HLA-E LINC00243 MRPS18B C6orf15 PSORS1C2 SFTA2 MUC21 HCG27 MDC1 ATAT1 PSORS1C1 MDC1-AS1
dgv1174e214 Chr.6:31139843 - 31176217 on Build GRCh38 Gain CCHCR1 TCF19 POU5F1 PSORS1C1 PSORS1C3
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication HLA-L PPP1R11 HCP5 MIR6891 HLA-B PSORS1C3 C6orf136 MUC22 VARS2 POU5F1 HCG18 MIR4640 MIR877 PPP1R18 DHX16 LOC102725068 HCG26 DPCR1 IER3 NRM LINC00243 TRIM39-RPP21 MICA TRIM10 MRPS18B C6orf15 SFTA2 TRIM31 HCG27 MDC1 PSORS1C1 DDR1 CCHCR1 LOC105375014 CDSN TRIM39 HCG22 RPP21 TRIM31-AS1 GNL1 HCG8 ZNRD1 HLA-J PRR3 HCG20 TRIM26 TUBB TCF19 HCG17 PPP1R10 GTF2H4 FLOT1 ABCF1 ZNRD1ASP HLA-C HLA-E PSORS1C2 MUC21 TRIM40 ATAT1 TRIM15 RNF39 MDC1-AS1

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s)


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