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Gene Symbol
CCHCR1
Assay Reference Genome
Location

Chr.6:31144770 on build GRCh38
Cytoband
6p21.33
Assay ID Hs00317719_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54535

Gene Name:

 coiled-coil alpha-helical rod protein 1

Gene Aliases:

 C6orf18, HCR, SBP

Location:

 Chr.6:31142439-31158238 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 16 - Exon 17
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CCHCR1 NM_001105563.1 NP_001099033.1
NM_001105564.1 NP_001099034.1
NM_019052.3 NP_061925.2
XM_011514702.2 XP_011513004.1
XM_011514703.1 XP_011513005.1
XM_011514704.2 XP_011513006.1
XM_011514705.1 XP_011513007.1
XM_017010961.1 XP_016866450.1
XM_017010962.1 XP_016866451.1
XM_017010963.1 XP_016866452.1
XM_017010964.1 XP_016866453.1
XM_017010965.1 XP_016866454.1
XM_017010966.1 XP_016866455.1
XM_017010967.1 XP_016866456.1
XM_017010968.1 XP_016866457.1
XM_017010969.1 XP_016866458.1
XM_017010970.1 XP_016866459.1
AB029331.1 BAA81890.1
AB112474.1 BAD05130.1
AB112475.1 BAD05131.1
AF216493.1 AAF74221.1
AK000204.1 BAA91007.1
AK000217.1 BAA91016.1
AK000533.1 BAA91236.1
AK289446.1
AK295494.1
AK310626.1 14 2054
AY029160.1 AAK55759.1
BC110534.1 AAI10535.1
BC110535.1 AAI10536.1
CR457227.1 CAG33508.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv525933 Chr.6:31113428 - 31174468 on Build GRCh38 Loss POU5F1 PSORS1C1 PSORS1C3 CDSN PSORS1C2 TCF19 CCHCR1
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion HLA-K PPP1R18 HLA-F LINC01015 TCF19 TRIM10 HCG17 OR12D3 MUC21 MICA HLA-C HLA-J TRIM40 IER3 MOG MDC1 RNF39 ZFP57 MRPS18B HCG27 HLA-E LINC00243 HCG22 ZNRD1ASP DDR1 PRR3 UBD MDC1-AS1 TRIM39 HCG4B C6orf15 RPP21 OR14J1 TUBB HLA-G HLA-L LOC105375014 HLA-B HCG4 OR5V1 SNORD32B PSORS1C3 SFTA2 TRIM39-RPP21 TRIM31-AS1 MIR4640 CCHCR1 MIR877 HCG9 HCG18 OR10C1 DPCR1 HLA-H OR2H1 HCG20 OR11A1 OR2J2 OR2H2 ZNRD1 MAS1L PPP1R11 ATAT1 POU5F1 HCG8 TRIM15 PSORS1C1 CDSN IFITM4P TRIM26 TRIM31 OR12D2 GABBR1 MUC22 HLA-A C6orf136 FLOT1 NRM LOC554223 MIR6891 GTF2H4 PPP1R10 ABCF1 PSORS1C2 LOC101929006 GNL1 DHX16 HLA-F-AS1 VARS2
nsv601481 Chr.6:30454855 - 31316476 on Build GRCh38 Loss PPP1R18 LOC105375014 PSORS1C3 SFTA2 MIR4640 TCF19 CCHCR1 MIR877 MUC21 DPCR1 HLA-C HCG20 IER3 MDC1 ATAT1 POU5F1 MRPS18B HCG27 HLA-E LINC00243 PSORS1C1 HCG22 CDSN DDR1 PRR3 MUC22 MDC1-AS1 C6orf136 FLOT1 C6orf15 NRM GTF2H4 PPP1R10 ABCF1 PSORS1C2 TUBB GNL1 DHX16 VARS2
nsv428140 Chr.6:31060513 - 31494329 on Build GRCh38 Gain+Loss POU5F1 HCG27 LOC102725068 HLA-B PSORS1C1 PSORS1C3 CDSN TCF19 CCHCR1 HCP5 C6orf15 HCG26 MICA MIR6891 HLA-C PSORS1C2
nsv524061 Chr.6:31139310 - 31166166 on Build GRCh38 Loss POU5F1 PSORS1C1 PSORS1C2 TCF19 CCHCR1
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion HLA-K PPP1R18 HCG16 LINC00533 HLA-F LINC01556 LINC01015 TCF19 TRIM10 HCG17 OR12D3 MUC21 HLA-J TRIM40 IER3 MOG MDC1 RNF39 ZFP57 MRPS18B HCG27 HLA-E LINC00243 HCG22 ZNRD1ASP DDR1 PRR3 UBD OR2J3 MDC1-AS1 TRIM39 HCG4B C6orf15 RPP21 LOC100129636 OR14J1 TUBB HLA-G HLA-L LOC105375014 HCG4 OR5V1 SNORD32B OR2W1 PSORS1C3 SFTA2 TRIM39-RPP21 TRIM31-AS1 MIR4640 CCHCR1 MIR877 HCG9 HCG18 HCG14 OR10C1 DPCR1 HLA-H LINC01623 OR2H1 HCG20 OR11A1 OR2J2 OR2H2 ZNRD1 MAS1L PPP1R11 ATAT1 POU5F1 HCG8 TRIM15 TRIM27 PSORS1C1 CDSN IFITM4P TRIM26 TRIM31 OR12D2 ZNF311 OR2B3 GABBR1 MUC22 HLA-A C6orf136 FLOT1 NRM LOC554223 GTF2H4 PPP1R10 ABCF1 PSORS1C2 LOC101929006 GNL1 DHX16 HLA-F-AS1 VARS2
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion HLA-K PPP1R18 HLA-F TCF19 TRIM10 HCG17 MUC21 HLA-C HLA-J TRIM40 IER3 MDC1 RNF39 MRPS18B HCG27 HLA-E LINC00243 HCG22 ZNRD1ASP DDR1 PRR3 MDC1-AS1 TRIM39 HCG4B C6orf15 RPP21 TUBB HLA-G HLA-L LOC105375014 HCG4 PSORS1C3 SFTA2 TRIM39-RPP21 TRIM31-AS1 MIR4640 CCHCR1 MIR877 HCG9 HCG18 DPCR1 HLA-H HCG20 ZNRD1 PPP1R11 ATAT1 POU5F1 HCG8 TRIM15 PSORS1C1 CDSN IFITM4P TRIM26 TRIM31 MUC22 HLA-A C6orf136 FLOT1 NRM LOC554223 GTF2H4 PPP1R10 ABCF1 PSORS1C2 GNL1 DHX16 HLA-F-AS1 VARS2
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss HLA-K PPP1R18 TCF19 TRIM10 HCG17 MUC21 HLA-C HLA-J TRIM40 IER3 MDC1 RNF39 MRPS18B HCG27 HLA-E LINC00243 HCG22 ZNRD1ASP DDR1 PRR3 MDC1-AS1 TRIM39 HCG4B C6orf15 RPP21 TUBB HLA-L LOC105375014 PSORS1C3 SFTA2 TRIM39-RPP21 TRIM31-AS1 MIR4640 CCHCR1 MIR877 HCG9 HCG18 DPCR1 HLA-H HCG20 ZNRD1 PPP1R11 ATAT1 POU5F1 HCG8 TRIM15 PSORS1C1 CDSN TRIM26 TRIM31 MUC22 HLA-A C6orf136 FLOT1 NRM GTF2H4 PPP1R10 ABCF1 PSORS1C2 GNL1 DHX16 VARS2
esv2731791 Chr.6:30404802 - 31346410 on Build GRCh38 Deletion PPP1R18 LOC105375014 PSORS1C3 SFTA2 MIR4640 TCF19 CCHCR1 MIR877 MUC21 DPCR1 HLA-C HCG20 IER3 MDC1 ATAT1 POU5F1 MRPS18B HCG27 HLA-E LINC00243 PSORS1C1 HCG22 CDSN DDR1 PRR3 MUC22 MDC1-AS1 C6orf136 FLOT1 C6orf15 NRM GTF2H4 PPP1R10 ABCF1 PSORS1C2 TUBB GNL1 DHX16 VARS2
dgv1174e214 Chr.6:31139843 - 31176217 on Build GRCh38 Gain POU5F1 PSORS1C1 PSORS1C3 TCF19 CCHCR1
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication PPP1R18 TCF19 TRIM10 HCG17 HCG26 MUC21 MICA HLA-C HLA-J TRIM40 IER3 MDC1 RNF39 MRPS18B HCG27 HLA-E LINC00243 HCG22 ZNRD1ASP DDR1 PRR3 MDC1-AS1 HCP5 TRIM39 C6orf15 RPP21 TUBB HLA-L LOC105375014 HLA-B PSORS1C3 SFTA2 TRIM39-RPP21 TRIM31-AS1 MIR4640 CCHCR1 MIR877 HCG18 DPCR1 HCG20 ZNRD1 PPP1R11 ATAT1 POU5F1 HCG8 LOC102725068 TRIM15 PSORS1C1 CDSN TRIM26 TRIM31 MUC22 C6orf136 FLOT1 NRM MIR6891 GTF2H4 PPP1R10 ABCF1 PSORS1C2 GNL1 DHX16 VARS2

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s)


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