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See other ZGPAT CNV Assays ›
Gene Symbol
ZGPAT
Assay Reference Genome
Location

Chr.20:63708818 on build GRCh38
Cytoband
20q13.33
Assay ID Hs00335870_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 84619

Gene Name:

 zinc finger CCCH-type and G-patch domain containing

Gene Aliases:

 GPATC6, GPATCH6, KIAA1847, ZC3H9, ZC3HDC9, ZIP

Location:

 Chr.20:63707442-63736142 on Build GRCh38

Assay Gene Location:

 Within Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZGPAT NM_001083113.1 2 384 NP_001076582.1
NM_001195653.1 2 408 NP_001182582.1
NM_001195654.1 2 427 NP_001182583.1
NM_032527.4 2 427 NP_115916.3
NM_181485.2 2 357 NP_852150.2
AB058750.3 2 361
AK027878.1 2 365 BAB55426.1
AK074961.1 2 346 BAC11317.1
AK307368.1
AK314726.1 2 397
BC019338.1 2 402 AAH19338.1
BC032612.1 2 347 AAH32612.1
CV027894.1 1 238
DA055150.1 2 408
DA252406.1 2 384
DA848516.1 2 358
DB025637.1 2 416
KU178806.1 1 238
KU178807.1 1 238

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv953308 Chr.20:63650148 - 63831847 on Build GRCh38 Deletion TNFRSF6B SLC2A4RG STMN3 LIME1 ZBTB46-AS1 ARFRP1 RTEL1 ZGPAT ZBTB46 RTEL1-TNFRSF6B
nsv1160690 Chr.20:63639552 - 63744287 on Build GRCh38 Deletion TNFRSF6B SLC2A4RG STMN3 LIME1 ARFRP1 RTEL1 ZGPAT ZBTB46 RTEL1-TNFRSF6B
nsv428381 Chr.20:63583375 - 64334167 on Build GRCh38 Gain+Loss OPRL1 DNAJC5 MIR941-4 SOX18 ZBTB46-AS1 PCMTD2 C20orf181 UCKL1-AS1 NPBWR2 ZGPAT ZBTB46 MIR941-2 TPD52L2 MIR647 TNFRSF6B SLC2A4RG LKAAEAR1 MIR941-5 MYT1 ARFRP1 RTEL1 SAMD10 LINC00266-1 GMEB2 LINC00176 RTEL1-TNFRSF6B MIR941-1 PRPF6 MIR1914 STMN3 TCEA2 RGS19 LOC100505771 LIME1 MIR941-3 UCKL1 ABHD16B ZNF512B MIR6813
nsv828801 Chr.20:63706624 - 63731055 on Build GRCh38 Loss ARFRP1 ZGPAT
nsv586611 Chr.20:63680946 - 63709340 on Build GRCh38 Loss TNFRSF6B ARFRP1 RTEL1 ZGPAT RTEL1-TNFRSF6B
nsv470563 Chr.20:63486715 - 63793308 on Build GRCh38 Loss TNFRSF6B SLC2A4RG EEF1A2 FNDC11 ARFRP1 RTEL1 ZGPAT ZBTB46 PTK6 GMEB2 RTEL1-TNFRSF6B PPDPF STMN3 SRMS LOC100505771 LIME1 HELZ2
esv2758806 Chr.20:63470996 - 63745014 on Build GRCh38 Gain+Loss TNFRSF6B SLC2A4RG EEF1A2 FNDC11 ARFRP1 RTEL1 ZGPAT ZBTB46 PTK6 GMEB2 RTEL1-TNFRSF6B PPDPF STMN3 SRMS LOC100505771 LIME1 KCNQ2 HELZ2

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