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See other RPUSD1 CNV Assays ›
Gene Symbol
RPUSD1
Assay Reference Genome
Location

Chr.16:787481 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00337022_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 113000

Gene Name:

 RNA pseudouridylate synthase domain containing 1

Gene Aliases:

 C16orf40, RLUCL

Location:

 Chr.16:784974-788383 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RPUSD1 NM_001324086.1 NP_001311015.1
NM_001324410.1 NP_001311339.1
NM_001324411.1 NP_001311340.1
NM_001324412.1 NP_001311341.1
NM_001324413.1 NP_001311342.1
NM_001324414.1 NP_001311343.1
NM_001324415.1 NP_001311344.1
NM_058192.2 NP_478072.1
AL514840.3
AL520203.3
BC011783.2 AAH11783.1
BG686882.1
BM763460.1
BX358716.2
CN311777.1
CN311779.1
CX786721.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4828n54 Chr.16:760143 - 828324 on Build GRCh38 Gain GNG13 RPUSD1 MIR662 CHTF18 PRR25 MSLN
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain GNG13 RPUSD1 MIR662 CHTF18 PRR25 MSLN
nsv817712 Chr.16:774098 - 810673 on Build GRCh38 Loss GNG13 RPUSD1 CHTF18 PRR25
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication GNG13 HBA2 GFER HBQ1 NOXO1 C1QTNF8 DNASE1L2 SNHG19 MRPL28 ZNF598 NARFL FAHD1 RNPS1 FBXL16 RPUSD1 TMEM8A MIR940 TBC1D24 FAM234A MIR3180-5 MPG KCTD5 LINC00254 UBE2I LOC105371047 MIR3677 PIGQ SNORD60 ABCA3 LOC105371049 MIR4717 SYNGR3 HBM PDPK1 PRR35 TPSB2 C16orf91 LOC100287175 LINC00235 BAIAP3 MIR6859-4 RPS2 SNORA64 WFIKKN1 MSRB1 DDX11L10 MIR3177 HAGHL MIR662 HAGH AMDHD2 LOC105371184 WDR24 HS3ST6 RAB26 C16orf59 MIR5587 LMF1-AS1 LOC106660606 CACNA1H RGS11 NHLRC4 PDIA2 MIR6511B1 WASIR2 RHBDF1 CASKIN1 METTL26 RAB40C CCDC78 LOC105371046 PTX4 LUC7L ABCA17P NME3 NTN3 SNORA10 RAB11FIP3 MCRIP2 NPW CRAMP1 RHOT2 TELO2 NTHL1 MRPS34 AXIN1 MIR6767 SSTR5 LOC105371038 UNKL DECR2 RNF151 LOC107987233 CCDC154 MIR1225 MSLN BRICD5 SNORA78 LMF1 SSTR5-AS1 TPSAB1 PKD1 CEMP1 MIR3178 LOC105371045 HBZ SLC9A3R2 IFT140 LOC729652 TPSG1 POLR3K PRSS29P PRR25 FAM173A FLJ42627 ERVK13-1 ECI1 HBA1 ARHGDIG TMEM204 JMJD8 NME4 TRAF7 TSC2 CHTF18 STUB1 NUBP2 LOC100134368 TBL3 SNHG9 RPL23AP5 E4F1 SOX8 PGP GNPTG MAPK8IP3 EME2 LOC101929280 LOC652276 ATP6V0C NDUFB10 MIR3176 MLST8 MIR6768 CCNF NPRL3 CAPN15 METRN LOC107984876 RHBDL1 RPL3L TPSD1 TSR3 SNRNP25 SPSB3 IGFALS HN1L MIR4516 WDR90 CLCN7 MEIOB PRSS27
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss GNG13 RHOT2 LINC00235 WFIKKN1 LOC101929280 LOC105371038 HAGHL MIR662 LOC105371184 LOC107987233 WDR24 MIR3176 MSLN NARFL MIR5587 FBXL16 RPUSD1 CAPN15 METRN PRR25 NHLRC4 FAM173A RHBDL1 METTL26 JMJD8 RAB40C CCDC78 PIGQ CHTF18 STUB1 PRR35 WDR90 RAB11FIP3 MCRIP2 LOC100287175
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss GNG13 RHOT2 RPUSD1 METRN FAM173A RHBDL1 JMJD8 LOC105371038 CCDC78 HAGHL MIR662 LOC105371184 CHTF18 WDR24 STUB1 MSLN WDR90 NARFL MCRIP2 LOC100287175 FBXL16
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss GNG13 RHOT2 LINC00235 WFIKKN1 LOC101929280 LOC105371038 HAGHL MIR662 LOC105371184 LOC107987233 WDR24 MIR3176 MSLN NARFL MIR5587 FBXL16 RPUSD1 CAPN15 METRN PRR25 NHLRC4 FAM173A RHBDL1 METTL26 JMJD8 RAB40C CCDC78 PIGQ CHTF18 STUB1 PRR35 WDR90 RAB11FIP3 MCRIP2 LOC100287175
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion GNG13 RHOT2 LINC00235 SOX8 WFIKKN1 C1QTNF8 LOC101929280 SSTR5 LOC105371038 HAGHL MIR662 LOC105371184 LOC107987233 WDR24 MIR3176 MSLN NARFL MIR5587 LMF1 SSTR5-AS1 LMF1-AS1 FBXL16 RPUSD1 CAPN15 METRN PRR25 NHLRC4 FAM173A LOC107984876 RHBDL1 METTL26 JMJD8 RAB40C CCDC78 PIGQ CHTF18 STUB1 PRR35 WDR90 RAB11FIP3 MCRIP2 LOC100287175
nsv571042 Chr.16:785298 - 847566 on Build GRCh38 Loss GNG13 RPUSD1 CHTF18 PRR25
nsv457312 Chr.16:760039 - 797743 on Build GRCh38 Loss RPUSD1 MIR662 CHTF18 MSLN
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication GNG13 RHOT2 WFIKKN1 LOC101929280 LOC105371038 HAGHL MIR662 LOC105371184 WDR24 MSLN NARFL FBXL16 RPUSD1 METRN FAM173A RHBDL1 METTL26 JMJD8 RAB40C CCDC78 PIGQ CHTF18 STUB1 WDR90 MCRIP2 LOC100287175
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication GNG13 RHOT2 LINC00235 WFIKKN1 LOC101929280 LOC105371038 HAGHL MIR662 LOC105371184 LOC107987233 WDR24 MIR3176 MSLN NARFL MIR5587 FBXL16 RPUSD1 CAPN15 METRN PRR25 NHLRC4 FAM173A RHBDL1 METTL26 JMJD8 RAB40C CCDC78 PIGQ CHTF18 STUB1 PRR35 WDR90 RAB11FIP3 MCRIP2 LOC100287175

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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