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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89739902 on build GRCh38
Cytoband
16q24.3
Assay ID Hs00371136_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 41
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
AK301168.1 11 1269
X99226.1 CAA67610.1

Target Gene Details

Entrez Gene ID:

 92822

Gene Name:

 zinc finger protein 276

Gene Aliases:

 CENP-Z, CENPZ, ZADT, ZFP276, ZNF477

Location:

 Chr.16:89720368-89740925 on Build GRCh38

Assay Gene Location:

 Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZNF276 NM_001113525.1 11 3598 NP_001106997.1
NM_152287.3 11 3588 NP_689500.2
NR_110122.1
NR_110126.1
NR_110128.1
NR_110129.1
XM_017023890.1 XP_016879379.1
AK056405.1
AK096004.1 1 1360
BM972950.1
BQ432535.1 1 542

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion ZNF276 FANCA VPS9D1 VPS9D1-AS1
nsv457624 Chr.16:89738447 - 89915950 on Build GRCh38 Loss ZNF276 LOC107984817 LOC105371419 TCF25 SPIRE2 FANCA
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion ZNF276 CDK10 SPATA2L FANCA VPS9D1 VPS9D1-AS1
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss GAS8-AS1 MC1R TUBB3 LOC105371419 GAS8 AFG3L1P DBNDD1 CHMP1A CDK10 DPEP1 DEF8 ZNF276 CENPBD1 LOC107984817 TCF25 SPATA33 SPIRE2 SPATA2L FANCA VPS9D1 VPS9D1-AS1
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain ZNF276 LOC107984817 LOC105371419 SPATA33 SPIRE2 CDK10 SPATA2L FANCA VPS9D1 VPS9D1-AS1
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss GAS8-AS1 MC1R TUBB3 LOC105371419 GAS8 CDK10 DPEP1 RPL13 URAHP ZNF276 LOC107984817 TCF25 SPATA33 SPIRE2 TUBB8P7 SPG7 CPNE7 SPATA2L ANKRD11 LOC105371414 PRDM7 LOC100287036 AFG3L1P DBNDD1 CHMP1A DEF8 CENPBD1 FAM157C ZNF778 LOC101927817 SNORD68 FANCA VPS9D1 VPS9D1-AS1
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss ZNF276 LOC107984817 LOC105371419 SPIRE2 FANCA
nsv833330 Chr.16:89678466 - 89741783 on Build GRCh38 Loss ZNF276 CDK10 SPATA2L FANCA VPS9D1 VPS9D1-AS1
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss LOC105371419 LOC107987238 CDK10 CTU2 RPL13 URAHP LOC107984817 APRT SPATA33 SPIRE2 LOC400558 SNAI3-AS1 TUBB8P7 SPG7 SNAI3 SPATA2L GALNS PRDM7 LOC100287036 CBFA2T3 MVD ZNF778 CYBA PIEZO1 CDH15 SNORD68 FANCA VPS9D1-AS1 GAS8-AS1 MC1R TUBB3 GAS8 LOC100289580 DPEP1 LOC100129697 ZNF276 PABPN1L TCF25 CPNE7 LOC101927793 ANKRD11 LOC105371414 AFG3L1P DBNDD1 CHMP1A LINC00304 SLC22A31 MIR4722 IL17C DEF8 LOC105371409 LOC339059 CENPBD1 FAM157C ACSF3 LOC101927817 RNF166 VPS9D1 TRAPPC2L CDT1
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion CHMP1A CDK10 DPEP1 RPL13 ZNF276 SPATA33 SPG7 CPNE7 SPATA2L SNORD68 FANCA VPS9D1 VPS9D1-AS1

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