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See other LIG1 CNV Assays ›
Gene Symbol
LIG1
Assay Reference Genome
Location

Chr.19:48115565 on build GRCh38
Cytoband
19q13.33
Assay ID Hs00373376_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3978

Gene Name:

 DNA ligase 1

Gene Aliases:

 -

Location:

 Chr.19:48115445-48170603 on Build GRCh38

Assay Gene Location:

 Within Exon 29
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LIG1 NM_000234.2 28 3264 NP_000225.1
NM_001289063.1 27 3171 NP_001275992.1
NM_001289064.1 26 3060 NP_001275993.1
NM_001320970.1 28 3261 NP_001307899.1
NM_001320971.1 27 3174 NP_001307900.1
NR_110296.1 28 4264
NR_135497.1 28 4267
NR_135498.1 26 4096
NR_135499.1 27 4177
NR_135500.1 28 4444
NR_135501.1 26 3085
XM_017026809.1 26 2793 XP_016882298.1
AB208791.1 28 3987 BAD92028.1
AK225863.1 17 1619
AK297296.1 26 2771
AK300370.1 27 2912
AK300607.1 23 2600
BC108318.1 28 3264 AAI08319.1
BC110622.2 27 3916 AAI10623.1
M36067.1 28 2964 AAA59518.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833853 Chr.19:47982539 - 48184317 on Build GRCh38 Loss CABP5 PLA2G4C-AS1 LIG1 BSPH1 C19orf68 PLA2G4C ELSPBP1
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss SNAR-A10 IL4I1 SLC17A7 FUZ BCL2L12 SNAR-C3 C19orf73 PNKP SNAR-A13 TMEM143 SNAR-A5 NTF4 ZNF114 PTOV1 BCAT2 ZNF473 MIR4750 NUP62 FCGRT SNAR-A4 SNORD32A SNORD35B SYNGR4 SEC1P MIR6798 SNAR-C1 BSPH1 HSD17B14 PRR12 RASIP1 PTOV1-AS1 ALDH16A1 SNAR-B1 SNORD35A HRC SNORD33 PRRG2 KDELR1 RPL13A SLC6A16 NUCB1 PTH2 SNAR-B2 CARD8 TSKS FLJ26850 FTL CGB1 TRPM4 CA11 RCN3 SIGLEC11 MAMSTR DHDH LIG1 CARD8-AS1 PPFIA3 SULT2B1 LOC105372430 MIR4749 GRWD1 CGB5 PLEKHA4 CGB8 MIR150 CCDC155 SNORD34 SNAR-C2 FUT1 NTN5 MIR6799 ELSPBP1 RPL18 SNAR-A7 PLA2G4C-AS1 SPACA4 SPHK2 TEAD2 PLA2G4C NOSIP FAM83E LHB SIGLEC16 CD37 SNAR-C5 FUT2 LOC101059948 GYS1 LIN7B RRAS SNRNP70 AKT1S1 CCDC114 BAX TULP2 KCNA7 SNAR-A8 SNAR-A12 AP2A1 SNAR-G2 SNAR-A1 SNAR-A2 PRMT1 DBP MIR4751 CGB7 GRIN2D CYTH2 SNAR-A6 SNAR-G1 LMTK3 PPP1R15A CGB3 MIR5088 LOC105447645 CABP5 EMP3 ATF5 MED25 IZUMO1 ADM5 SNAR-A11 LOC100287477 VRK3 RPS11 GFY SNAR-A3 TBC1D17 IRF3 FLT3LG FGF21 SNAR-A14 PTOV1-AS2 C19orf68 DKKL1 NUCB1-AS1 KCNJ14 SCAF1 MIR4324 PIH1D1 MIR6800 SNAR-D CPT1C SNAR-A9 RUVBL2 CGB2 LOC101928295 SNAR-C4
esv34181 Chr.19:48009377 - 48416682 on Build GRCh38 Loss CABP5 EMP3 PLA2G4C-AS1 KDELR1 LIG1 CARD8-AS1 C19orf68 SYNGR4 PLA2G4C GRIN2D TMEM143 CARD8 ZNF114 CCDC114 ELSPBP1

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