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See other EGFL8 CNV Assays ›
Gene Symbol
EGFL8
Assay Reference Genome
Location

Chr.6:32167555 on build GRCh38
Cytoband
6p21.32
Assay ID Hs00375560_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 80864

Gene Name:

 EGF like domain multiple 8

Gene Aliases:

 C6orf8, NG3

Location:

 Chr.6:32164605-32168285 on Build GRCh38

Assay Gene Location:

 Within Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
EGFL8 NM_030652.3 8 815 NP_085155.1
NR_037860.1 8 839
AB190520.1 7 753 BAD51398.1
AK126457.1 5 1971
AY358139.1 8 800 AAQ88506.1
BC035574.1 8 792 AAH35574.1
BC052591.1 8 839 AAH52591.1

Target Gene Details

Entrez Gene ID:

 100532746

Gene Name:

 PPT2-EGFL8 readthrough (NMD candidate)

Gene Aliases:

 -

Location:

 Chr.6:32153999-32168285 on Build GRCh38

Assay Gene Location:

 Within Exon 15
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PPT2-EGFL8 NR_037861.1 15 2251
AB209572.1 6 2435 BAD92809.1
AF020544.1 15 2405 AAB80731.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss ATF6B AGER EGFL8 PPT2-EGFL8 AGPAT1 RNF5 PRRT1 TNXB FKBPL PBX2 NOTCH4 PPT2 MIR6721 LOC100507547 MIR6833 GPSM3
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss ATF6B HLA-DRB1 SNORD48 C2-AS1 HLA-DQB1-AS1 HLA-DQA1 MIR6721 HLA-DRB6 LOC100507547 SKIV2L GPSM3 HSPA1A SLC44A4 C2 AGPAT1 RNF5 C6orf48 STK19 DXO HLA-DRA CYP21A1P PBX2 TNXA EGFL8 PPT2-EGFL8 NELFE CFB PRRT1 BTNL2 SNORD52 C6orf10 C4A NOTCH4 HLA-DRB5 MIR1236 EHMT2 HCG23 C4B CYP21A2 AGER LOC101929163 HLA-DQB1 TNXB ZBTB12 FKBPL HSPA1B NEU1 PPT2 MIR6833
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss ATF6B HLA-DRB1 TNXA EGFL8 PPT2-EGFL8 PRRT1 BTNL2 HLA-DQA2 C6orf10 C4A NOTCH4 HLA-DQB1-AS1 HLA-DQA1 HLA-DRB5 MIR6721 HLA-DRB6 LOC100507547 GPSM3 HLA-DQB2 HCG23 C4B CYP21A2 AGER AGPAT1 RNF5 LOC101929163 HLA-DQB1 TNXB MIR3135B HLA-DRA CYP21A1P FKBPL PBX2 PPT2 MIR6833
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss ATF6B TNXA EGFL8 PPT2-EGFL8 NELFE CFB PRRT1 C2-AS1 C4A NOTCH4 MIR1236 MIR6721 LOC100507547 SKIV2L GPSM3 C4B CYP21A2 AGER C2 AGPAT1 RNF5 STK19 TNXB DXO CYP21A1P FKBPL PBX2 PPT2 MIR6833
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion LY6G5B LST1 ATF6B HLA-DRB1 PRRC2A SAPCD1-AS1 ATP6V1G2 MIR4646 SNORD48 C2-AS1 LOC102725068 LTA C6orf25 MSH5-SAPCD1 VWA7 HCP5 LTB MIR6721 HLA-DRB6 LOC100507547 SKIV2L SNORD117 GPSM3 HSPA1A GPANK1 SLC44A4 C2 AGPAT1 RNF5 C6orf48 STK19 DXO HLA-DRA CYP21A1P LY6G6C PBX2 CLIC1 LY6G6E APOM C6orf47 DDAH2 TNXA HCG26 EGFL8 PPT2-EGFL8 NELFE NFKBIL1 CFB PRRT1 DDX39B BTNL2 DDX39B-AS1 ABHD16A LY6G6F MSH5 CSNK2B SNORD52 C6orf10 C4A NOTCH4 TNF HLA-DRB5 VARS MIR1236 EHMT2 AIF1 LSM2 HCG23 LOC100287329 C4B CYP21A2 MICB MIR6832 AGER HSPA1L LY6G5C BAG6 LY6G6D LOC101929163 NCR3 TNXB ZBTB12 FKBPL SNORD84 HSPA1B NEU1 MCCD1 PPT2 MIR6833 SNORA38 ATP6V1G2-DDX39B SAPCD1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion LY6G5B WDR46 ATF6B ZBTB22 PRRC2A HLA-DPB1 HLA-DQA2 HCG25 LOC102725068 RPS18 TAPBP BRD2 HCP5 LOC100507547 SKIV2L SNORD117 GPSM3 HLA-DOB C2 RNF5 C6orf48 MIR3135B DXO CYP21A1P PSMB8 CLIC1 VPS52 LY6G6E ZBTB9 TAP2 DDAH2 HCG26 PPT2-EGFL8 CFB PRRT1 DDX39B C6orf10 C4A HLA-DRB5 VARS MIR1236 AIF1 LSM2 HCG23 LOC100287329 C4B HSD17B8 AGER HSPA1L LY6G5C BAG6 LOC101929163 RGL2 HLA-DQB1 TNXB PFDN6 ZBTB12 SNORD84 PHF1 PSMB8-AS1 MCCD1 PPT2 ATP6V1G2-DDX39B SAPCD1 PPP1R2P1 LST1 HLA-DRB1 SAPCD1-AS1 HLA-DMB ATP6V1G2 MIR4646 SNORD48 C2-AS1 LTA C6orf25 DAXX MSH5-SAPCD1 PSMB9 VWA7 LTB SYNGAP1 HLA-DQB1-AS1 HLA-DQA1 MIR6721 HLA-DRB6 KIFC1 HSPA1A MIR6834 GPANK1 SLC39A7 SLC44A4 AGPAT1 HLA-DPB2 STK19 HLA-DRA LY6G6C TAP1 PBX2 MIR219A1 HLA-DPA1 APOM C6orf47 MIR6873 TNXA MIR5004 EGFL8 NELFE NFKBIL1 BTNL2 DDX39B-AS1 ABHD16A LY6G6F MSH5 CSNK2B RXRB COL11A2 SNORD52 NOTCH4 TNF RING1 EHMT2 HLA-DQB2 HCG24 CYP21A2 HLA-DMA MICB MIR6832 CUTA LY6G6D HLA-DOA NCR3 FKBPL LOC100294145 HSPA1B NEU1 MIR6833 B3GALT4 SNORA38
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss ATF6B AGER EGFL8 PPT2-EGFL8 AGPAT1 RNF5 PRRT1 TNXB FKBPL PBX2 NOTCH4 PPT2 MIR6721 LOC100507547 MIR6833 GPSM3
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion LY6G5B WDR46 ATF6B ZBTB22 PRRC2A HLA-DPB1 HLA-DQA2 HCG25 LOC102725068 RPS18 TAPBP BRD2 HCP5 LOC100507547 SKIV2L SNORD117 GPSM3 HLA-DOB C2 RNF5 C6orf48 MIR3135B DXO CYP21A1P PSMB8 CLIC1 VPS52 LY6G6E ZBTB9 TAP2 DDAH2 HCG26 PPT2-EGFL8 CFB PRRT1 DDX39B C6orf10 C4A HLA-DRB5 VARS MIR1236 AIF1 LSM2 HCG23 LOC100287329 C4B HSD17B8 AGER HSPA1L LY6G5C BAG6 LOC101929163 RGL2 HLA-DQB1 TNXB PFDN6 ZBTB12 SNORD84 PHF1 PSMB8-AS1 MCCD1 PPT2 ATP6V1G2-DDX39B SAPCD1 PPP1R2P1 LST1 HLA-DRB1 SAPCD1-AS1 HLA-DMB ATP6V1G2 MIR4646 SNORD48 C2-AS1 LTA C6orf25 DAXX MSH5-SAPCD1 PSMB9 VWA7 LTB SYNGAP1 HLA-DQB1-AS1 HLA-DQA1 MIR6721 HLA-DRB6 KIFC1 HSPA1A MIR6834 GPANK1 SLC39A7 SLC44A4 AGPAT1 HLA-DPB2 STK19 HLA-DRA LY6G6C TAP1 PBX2 MIR219A1 HLA-DPA1 APOM C6orf47 MIR6873 TNXA MIR5004 EGFL8 NELFE NFKBIL1 BTNL2 DDX39B-AS1 ABHD16A LY6G6F MSH5 CSNK2B RXRB COL11A2 SNORD52 NOTCH4 TNF RING1 EHMT2 HLA-DQB2 HCG24 CYP21A2 HLA-DMA MICB MIR6832 CUTA LY6G6D HLA-DOA NCR3 FKBPL LOC100294145 HSPA1B NEU1 MIR6833 B3GALT4 SNORA38
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss LY6G5B LST1 ATF6B PRRC2A SAPCD1-AS1 MICA ATP6V1G2 MIR4646 SNORD48 C2-AS1 LOC102725068 LTA C6orf25 MSH5-SAPCD1 VWA7 HCP5 LTB MIR6721 LOC100507547 SKIV2L SNORD117 GPSM3 HSPA1A GPANK1 SLC44A4 C2 AGPAT1 RNF5 C6orf48 STK19 DXO HLA-DRA CYP21A1P LY6G6C PBX2 CLIC1 LY6G6E APOM C6orf47 DDAH2 TNXA HCG26 EGFL8 PPT2-EGFL8 NELFE NFKBIL1 CFB PRRT1 DDX39B BTNL2 DDX39B-AS1 ABHD16A LY6G6F MSH5 CSNK2B MIR6891 SNORD52 C6orf10 C4A NOTCH4 TNF VARS MIR1236 EHMT2 AIF1 LSM2 HCG23 LOC100287329 C4B CYP21A2 MICB MIR6832 AGER HSPA1L LY6G5C BAG6 LY6G6D LOC101929163 HLA-B NCR3 TNXB ZBTB12 FKBPL SNORD84 HSPA1B NEU1 MCCD1 PPT2 MIR6833 SNORA38 ATP6V1G2-DDX39B SAPCD1

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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