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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2181408 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00376718_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 18 1992 NP_065815.1
AB037727.1 10 1129 BAA92544.1
AF451977.1 18 2058 AAL49758.1
BC042011.1 9 1011 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LINC00235 HN1L TMEM8A MIR662 HAGHL TELO2 SNORA78 RGS11 ATP6V0C LINC00254 FAM234A SSTR5-AS1 MIR6859-4 SNORA10 LOC100134368 NME4 RPS2 TBC1D24 TMEM204 RAB11FIP3 LOC101929280 CLCN7 MAPK8IP3 CAPN15 MPG MRPL28 CEMP1 NPW PRR35 LOC105371038 PKD1 RHBDF1 LOC106660606 UNKL MIR3176 LOC105371045 AXIN1 NOXO1 MIR940 TSR3 TPSAB1 GNG13 IGFALS MIR6768 FLJ42627 HBA1 SSTR5 SNHG19 LOC105371184 SNORA64 C16orf91 EME2 MEIOB TRAF7 BAIAP3 UBE2I TBL3 MIR3180-5 ARHGDIG LOC105371047 RPL23AP5 NPRL3 RHOT2 CRAMP1 LMF1-AS1 IFT140 SLC9A3R2 FBXL16 PDPK1 CCNF HBM ZNF598 RHBDL1 LOC100287175 BRICD5 LOC107987233 NHLRC4 DDX11L10 RNPS1 E4F1 SNORD60 PRSS29P METRN MIR4717 ABCA3 MCRIP2 MIR6767 CASKIN1 TSC2 ABCA17P SNHG9 LOC105371046 TPSB2 LOC729652 LOC105371049 PGP MIR6511B1 PRR25 MIR3177 C1QTNF8 FAHD1 MIR5587 NTN3 LOC652276 TPSD1 HBQ1 HS3ST6 LMF1 GNPTG LUC7L AMDHD2 SYNGR3 NUBP2 JMJD8 PDIA2 WDR24 GFER NTHL1 WDR90 RPL3L METTL26 ECI1 WFIKKN1 MSRB1 SPSB3 SNRNP25 FAM173A DNASE1L2 KCTD5 CCDC78 ERVK13-1 PRSS27 RPUSD1 MSLN CACNA1H STUB1 RAB40C RAB26 HBZ MLST8 TPSG1 MIR1225 NDUFB10 NME3 MIR3178 MRPS34 DECR2 RNF151 WASIR2 MIR3677 NARFL CCDC154 HBA2 MIR4516 C16orf59 HAGH POLR3K PIGQ SOX8 PTX4 LOC107984876 CHTF18
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss TSC2 DNASE1L2 SNHG19 LOC105371049 PGP TRAF7 TBL3 MIR3180-5 MIR6511B1 RAB26 MLST8 MIR1225 SLC9A3R2 ZNF598 BRICD5 NPW SYNGR3 PKD1 MIR4516 RNPS1 E4F1 GFER NTHL1 SNORD60 NOXO1 ECI1 CASKIN1
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss TSC2 DNASE1L2 SNHG19 LOC105371049 PGP TRAF7 BRICD5 MIR3180-5 MIR6511B1 PKD1 MIR4516 RAB26 E4F1 SNORD60 MLST8 ECI1 MIR1225 CASKIN1
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss DNASE1L2 MIR3677 SNHG19 PGP TRAF7 BRICD5 LOC106660606 RNPS1 RAB26 E4F1 SNORD60 MLST8 MIR940 ECI1 CASKIN1
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss RAB26 TSC2 SNORD60 SNHG19 LOC105371049 TRAF7 MIR1225 MIR3180-5 MIR6511B1 PKD1 CASKIN1 MIR4516
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain TRAF7 CASKIN1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain TSC2 DNASE1L2 ABCA17P SNHG19 LOC729652 LOC105371049 PGP TRAF7 MIR3180-5 MIR6511B1 RAB26 ATP6V0C MLST8 TBC1D24 NTN3 LOC652276 MIR1225 MIR3178 PDPK1 MIR3677 CCNF BRICD5 CEMP1 AMDHD2 PKD1 MIR4516 LOC106660606 RNPS1 C16orf59 E4F1 SNORD60 MIR940 ECI1 MIR6768 MIR4717 ABCA3 MIR6767 CASKIN1
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss RNPS1 E4F1 DNASE1L2 MIR3677 MLST8 MIR940 ECI1 PGP TRAF7 BRICD5 CASKIN1 LOC106660606
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion DNASE1L2 MIR3677 SNHG19 PGP TRAF7 BRICD5 LOC106660606 RNPS1 RAB26 E4F1 SNORD60 MLST8 MIR940 ECI1 MIR4717 ABCA3 CASKIN1

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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