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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2181408 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00376718_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 18 1992 NP_065815.1
AB037727.1 10 1129 BAA92544.1
AF451977.1 18 2058 AAL49758.1
BC042011.1 9 1011 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication SNORA10 PGP CCDC154 PRR25 RHBDL1 PDPK1 CRAMP1 TRAF7 C1QTNF8 EME2 CEMP1 LMF1 GFER RAB11FIP3 WDR24 SNORA64 PDIA2 RPL23AP5 MIR4516 LOC105371184 TPSB2 LOC105371049 SSTR5-AS1 MIR662 MIR6859-4 MIR3176 GNG13 RHBDF1 LOC105371046 UBE2I LUC7L ABCA3 LOC106660606 NTHL1 METRN TBC1D24 LOC107984876 BAIAP3 SYNGR3 HAGH TELO2 HAGHL GNPTG MIR3180-5 ERVK13-1 LOC105371045 HBM ATP6V0C MIR940 LOC100287175 RGS11 LOC107987233 LINC00254 KCTD5 NPW TSR3 C16orf91 JMJD8 NDUFB10 MAPK8IP3 TPSAB1 HN1L TPSG1 FLJ42627 PRR35 SPSB3 RHOT2 MIR3677 TSC2 RAB26 WASIR2 ARHGDIG RPUSD1 CASKIN1 DECR2 DDX11L10 AMDHD2 PRSS29P TBL3 MIR6511B1 LOC729652 MIR6767 HS3ST6 PKD1 MIR4717 HBA1 PRSS27 MSLN SNRNP25 STUB1 SLC9A3R2 SNORA78 RAB40C HBZ UNKL CAPN15 SNHG9 AXIN1 METTL26 MIR3178 LOC100134368 LOC105371038 NPRL3 PIGQ MIR5587 SNHG19 FAHD1 FAM173A MLST8 NUBP2 CLCN7 LINC00235 IFT140 ECI1 LOC652276 LOC105371047 PTX4 FBXL16 ZNF598 NHLRC4 NOXO1 RNF151 RPL3L CCNF MIR6768 POLR3K FAM234A RPS2 C16orf59 WDR90 SNORD60 NTN3 NME4 MIR3177 IGFALS CCDC78 NARFL CACNA1H TMEM8A E4F1 CHTF18 LMF1-AS1 HBQ1 WFIKKN1 MEIOB DNASE1L2 RNPS1 MRPS34 MCRIP2 MIR1225 LOC101929280 SSTR5 NME3 MRPL28 SOX8 MPG HBA2 TMEM204 BRICD5 MSRB1 ABCA17P TPSD1
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss SLC9A3R2 PGP MIR3180-5 SNORD60 MIR940 TRAF7 NPW E4F1 GFER DNASE1L2 MIR4516 SNHG19 RNPS1 MLST8 LOC105371049 MIR1225 ECI1 MIR3677 TSC2 RAB26 ABCA3 LOC106660606 CASKIN1 NTHL1 ZNF598 NOXO1 TBL3 MIR6511B1 PKD1 BRICD5 SYNGR3 MIR4717
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss DNASE1L2 MIR4516 SNHG19 PGP MLST8 LOC105371049 MIR3180-5 MIR1225 SNORD60 ECI1 TSC2 RAB26 TRAF7 CASKIN1 E4F1 MIR6511B1 PKD1 BRICD5
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss DNASE1L2 SNHG19 PGP RNPS1 MLST8 SNORD60 ECI1 MIR3677 MIR940 RAB26 TRAF7 LOC106660606 CASKIN1 E4F1 BRICD5
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss TRAF7 CASKIN1 MIR4516 SNHG19 LOC105371049 MIR3180-5 MIR6511B1 MIR1225 SNORD60 PKD1 TSC2 RAB26
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain TRAF7 CASKIN1
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss TRAF7 DNASE1L2 LOC106660606 CASKIN1 PGP RNPS1 MLST8 E4F1 ECI1 MIR3677 BRICD5 MIR940
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain C16orf59 PGP MIR3180-5 SNORD60 PDPK1 NTN3 ATP6V0C MIR940 TRAF7 MIR3178 CEMP1 E4F1 DNASE1L2 MIR4516 SNHG19 RNPS1 MLST8 LOC105371049 MIR1225 ECI1 MIR3677 LOC652276 TSC2 RAB26 ABCA3 LOC106660606 CASKIN1 TBC1D24 AMDHD2 MIR6511B1 LOC729652 MIR6767 PKD1 CCNF BRICD5 MIR6768 MIR4717 ABCA17P
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion DNASE1L2 SNHG19 PGP RNPS1 MLST8 SNORD60 ECI1 MIR3677 MIR940 RAB26 TRAF7 ABCA3 LOC106660606 CASKIN1 E4F1 BRICD5 MIR4717

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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