Genomic Map
Back To TopAssay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
| NM_001288792.1 | 3 | 379 | NP_001275721.1 | |
| NM_001288793.1 | NP_001275722.1 | |||
| NM_198481.3 | 3 | 379 | NP_940883.2 | |
| NR_110142.1 | 3 | 379 | ||
| XM_011526845.1 | 3 | 392 | XP_011525147.1 | |
| XM_011526846.1 | 3 | 392 | XP_011525148.1 | |
| XM_011526847.1 | 3 | 392 | XP_011525149.1 | |
| XM_011526848.1 | 3 | 392 | XP_011525150.1 | |
| XM_011526849.1 | 3 | 392 | XP_011525151.1 | |
| XM_017026666.1 | 3 | 392 | XP_016882155.1 | |
| AY358542.1 | 3 | 388 | AAQ88906.1 | |
| BC100943.2 | 3 | 356 | AAI00944.1 | |
| DQ479397.1 | 3 | 220 | ||
| FJ584316.1 | 3 | 214 | ||
| FJ584317.1 | 3 | 214 | ||
| FJ584318.1 | 3 | 214 | ||
| FJ584319.1 | ||||
| FJ584320.1 | ||||
| FJ882051.1 | 3 | 214 | ||
| FN398145.1 | 3 | 207 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv458782 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain |
 CACNG6
MIR935
VSTM1
CACNG8
TARM1
|
| nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion |
PRPF31
VSTM1
OSCAR
NDUFA3
TARM1
TFPT
|
| nsv182 | Chr.19:54050737 - 54097924 on Build GRCh38 | Deletion |
VSTM1
OSCAR
TARM1
|
| nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain |
CACNG7
CACNG6
MIR935
VSTM1
CACNG8
|
| nsv9750 | Chr.19:54049927 - 54058628 on Build GRCh38 | Gain |
VSTM1
|
| esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion |
MIR518A2
MIR521-1
MIR519A2
LILRB2
DPRX
MIR524
ZNF525
MIR515-2
NDUFA3
ZNF761
LOC284379
MIR518B
MIR518E
MIR526A1
CACNG6
MIR373
MIR1323
MIR512-1
MIR520H
MIR525
LILRA6
MIR518A1
MIR520A
FAM90A27P
MIR520E
ZNF677
ZNF818P
MIR512-2
MIR520C
MIR520B
MIR520F
TPM3P9
MIR371A
TSEN34
MIR515-1
LOC105372457
LILRA5
MIR371B
ZNF665
MBOAT7
MIR526A2
PRKCG
VN1R2
CACNG7
MIR519B
LENG1
MIR935
CNOT3
LILRB5
MIR372
TARM1
MIR519C
MIR521-2
MIR522
VN1R4
MIR518F
MIR518C
ZNF765
MIR526B
MIR523
MIR520D
PRPF31
MIR516B2
CACNG8
MIR498
MIR4752
MIR517B
MIR516A1
ZNF813
MIR519A1
ZNF845
MIR519E
BIRC8
MIR517A
MIR1283-1
MIR1283-2
LILRB3
MIR516B1
ZNF331
MYADM
MIR518D
NLRP12
MIR516A2
RPS9
MIR520G
VSTM1
OSCAR
MIR517C
MIR519D
TMC4
MIR527
TFPT
|
| dgv663e199 | Chr.19:54051591 - 54059132 on Build GRCh38 | Deletion |
VSTM1
|
| esv3644780 | Chr.19:54057724 - 54066399 on Build GRCh38 | Gain |
VSTM1
|
| nsv580137 | Chr.19:54053501 - 54058538 on Build GRCh38 | Loss |
VSTM1
|
| nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss |
CACNG6
MIR935
PRPF31
VSTM1
CACNG8
OSCAR
NDUFA3
TARM1
TFPT
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
Back To Top