Name: [Hs00418164_cn] [PPT2]
Creator: Thermo Fisher Scientific
Keywords: [PPT2] Assay, [palmitoyl-protein thioesterase 2] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	9374
Gene Name:	palmitoyl-protein thioesterase 2
Gene Aliases:	C6orf8, G14, PPT-2
Location:	Chr.6:32153452-32163681 on Build GRCh38
Assay Gene Location:	Overlaps Exon 5 - Intron 5

Gene Symbol	Transcript Accession	Protein ID
PPT2	NM_001204103.1	NP_001191032.1
	NM_005155.6	NP_005146.4
	NM_138717.2	NP_619731.2
	AF020543.1	AAB80730.1
	AL110128.1	CAB53659.1
	BC001355.2	AAH01355.1
	CR533546.1	CAG38577.1
	Y17958.1	CAB46981.1

Target Gene Details

Entrez Gene ID:	100532746
Gene Name:	PPT2-EGFL8 readthrough (NMD candidate)
Gene Aliases:	-
Location:	Chr.6:32153999-32168285 on Build GRCh38
Assay Gene Location:	Overlaps Exon 4 - Intron 4

Gene Symbol	Transcript Accession	Protein ID
PPT2-EGFL8	NR_037861.1
	AB209572.1	BAD92809.1
	AF020544.1	AAB80731.1
	AK290473.1
	AK296648.1
	AK307427.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv830629	Chr.6:32076201 - 32222010 on Build GRCh38	Loss	AGPAT1 FKBPL GPSM3 PPT2 RNF5 LOC100507547 NOTCH4 PPT2-EGFL8 MIR6721 TNXB PBX2 EGFL8 AGER ATF6B PRRT1 MIR6833
dgv10472n54	Chr.6:31985690 - 32812026 on Build GRCh38	Loss	FKBPL HLA-DQB1 CYP21A2 RNF5 HLA-DQB2 MIR6721 TNXB PBX2 HLA-DRA HLA-DRB6 C4A HLA-DRB1 EGFL8 HCG23 C6orf10 MIR6833 AGPAT1 GPSM3 MIR3135B TNXA PPT2 LOC100507547 NOTCH4 C4B PPT2-EGFL8 LOC101929163 HLA-DQB1-AS1 HLA-DQA1 CYP21A1P HLA-DRB5 HLA-DQA2 AGER ATF6B PRRT1 BTNL2
dgv10463n54	Chr.6:31817661 - 32683279 on Build GRCh38	Loss	FKBPL C2-AS1 CYP21A2 NELFE HSPA1A TNXB PBX2 HLA-DRA C4A EGFL8 HCG23 CFB MIR6833 NEU1 AGPAT1 GPSM3 TNXA PPT2 SKIV2L C4B LOC101929163 HLA-DQB1-AS1 C2 SNORD52 HLA-DQA1 ATF6B HLA-DQB1 RNF5 MIR6721 STK19 SNORD48 HLA-DRB6 HSPA1B EHMT2 HLA-DRB1 C6orf10 ZBTB12 MIR1236 SLC44A4 DXO LOC100507547 NOTCH4 PPT2-EGFL8 CYP21A1P HLA-DRB5 C6orf48 AGER PRRT1 BTNL2
esv2759415	Chr.6:31903735 - 32241336 on Build GRCh38	Gain+Loss	FKBPL C2-AS1 CYP21A2 RNF5 MIR6721 NELFE TNXB STK19 PBX2 C4A EGFL8 CFB MIR6833 MIR1236 AGPAT1 GPSM3 TNXA PPT2 DXO LOC100507547 NOTCH4 SKIV2L C4B PPT2-EGFL8 C2 CYP21A1P AGER ATF6B PRRT1
nsv1126749	Chr.6:31457323 - 32594423 on Build GRCh38	Deletion	MCCD1 LY6G5C SNORD84 FKBPL LY6G5B SNORD117 C2-AS1 VWA7 CYP21A2 MSH5 MIR4646 MSH5-SAPCD1 LY6G6E LOC102725068 NELFE HSPA1A TNXB PBX2 HLA-DRA C4A EGFL8 HCG23 C6orf47 CFB MIR6833 SNORA38 NEU1 AGPAT1 LST1 GPANK1 DDAH2 GPSM3 TNXA PPT2 APOM BAG6 NCR3 LY6G6C SKIV2L C4B LOC101929163 LSM2 C2 SNORD52 C6orf25 HSPA1L LTA HCP5 ATF6B PRRC2A SAPCD1-AS1 DDX39B ATP6V1G2-DDX39B LOC100287329 NFKBIL1 ABHD16A RNF5 AIF1 MIR6832 TNF MIR6721 STK19 SAPCD1 SNORD48 HLA-DRB6 LY6G6D HSPA1B EHMT2 HLA-DRB1 ATP6V1G2 C6orf10 ZBTB12 MIR1236 SLC44A4 CLIC1 LY6G6F LTB DXO LOC100507547 MICB CSNK2B NOTCH4 DDX39B-AS1 PPT2-EGFL8 VARS CYP21A1P HCG26 HLA-DRB5 C6orf48 AGER PRRT1 BTNL2
nsv1073969	Chr.6:31456422 - 33480523 on Build GRCh38	Deletion	SNORD84 RGL2 LY6G5B C2-AS1 VWA7 MIR4646 MSH5-SAPCD1 LY6G6E RXRB HLA-DQB2 LOC102725068 HSPA1A C4A EGFL8 C6orf47 CFB MIR6833 GPSM3 TNXA APOM LY6G6C SKIV2L C4B LSM2 HLA-DQB1-AS1 HLA-DPB2 HLA-DQA1 PHF1 PRRC2A HLA-DPA1 HLA-DQB1 TAP1 ABHD16A MIR6832 MIR6834 LOC100294145 STK19 ZBTB22 HLA-DMB MIR6873 HSPA1B ATP6V1G2 C6orf10 ZBTB12 TAP2 MIR1236 SLC44A4 HLA-DOB HLA-DMA LY6G6F MICB CSNK2B NOTCH4 RPS18 CYP21A1P HCG26 SYNGAP1 HLA-DRB5 PRRT1 MCCD1 LY6G5C FKBPL SNORD117 KIFC1 CYP21A2 MSH5 ZBTB9 CUTA PPP1R2P1 NELFE TNXB SLC39A7 PBX2 HLA-DRA HCG25 PFDN6 HCG23 SNORA38 NEU1 COL11A2 AGPAT1 LST1 HSD17B8 GPANK1 DDAH2 MIR3135B PPT2 BAG6 NCR3 HLA-DPB1 LOC101929163 HCG24 C2 SNORD52 C6orf25 HSPA1L LTA VPS52 HLA-DOA HCP5 ATF6B SAPCD1-AS1 PSMB9 DDX39B PSMB8 ATP6V1G2-DDX39B LOC100287329 NFKBIL1 BRD2 RNF5 AIF1 TNF MIR6721 MIR5004 SAPCD1 SNORD48 HLA-DRB6 LY6G6D B3GALT4 EHMT2 HLA-DRB1 WDR46 CLIC1 LTB DXO LOC100507547 TAPBP DDX39B-AS1 DAXX PPT2-EGFL8 VARS RING1 HLA-DQA2 MIR219A1 C6orf48 PSMB8-AS1 AGER BTNL2
nsv602104	Chr.6:32096949 - 32203906 on Build GRCh38	Loss	AGPAT1 FKBPL GPSM3 PPT2 RNF5 LOC100507547 NOTCH4 PPT2-EGFL8 MIR6721 TNXB PBX2 EGFL8 AGER ATF6B PRRT1 MIR6833
nsv1112900	Chr.6:31455323 - 33480423 on Build GRCh38	Deletion	SNORD84 RGL2 LY6G5B C2-AS1 VWA7 MIR4646 MSH5-SAPCD1 LY6G6E RXRB HLA-DQB2 LOC102725068 HSPA1A C4A EGFL8 C6orf47 CFB MIR6833 GPSM3 TNXA APOM LY6G6C SKIV2L C4B LSM2 HLA-DQB1-AS1 HLA-DPB2 HLA-DQA1 PHF1 PRRC2A HLA-DPA1 HLA-DQB1 TAP1 ABHD16A MIR6832 MIR6834 LOC100294145 STK19 ZBTB22 HLA-DMB MIR6873 HSPA1B ATP6V1G2 C6orf10 ZBTB12 TAP2 MIR1236 SLC44A4 HLA-DOB HLA-DMA LY6G6F MICB CSNK2B NOTCH4 RPS18 CYP21A1P HCG26 SYNGAP1 HLA-DRB5 PRRT1 MCCD1 LY6G5C FKBPL SNORD117 KIFC1 CYP21A2 MSH5 ZBTB9 CUTA PPP1R2P1 NELFE TNXB SLC39A7 PBX2 HLA-DRA HCG25 PFDN6 HCG23 SNORA38 NEU1 COL11A2 AGPAT1 LST1 HSD17B8 GPANK1 DDAH2 MIR3135B PPT2 BAG6 NCR3 HLA-DPB1 LOC101929163 HCG24 C2 SNORD52 C6orf25 HSPA1L LTA VPS52 HLA-DOA HCP5 ATF6B SAPCD1-AS1 PSMB9 DDX39B PSMB8 ATP6V1G2-DDX39B LOC100287329 NFKBIL1 BRD2 RNF5 AIF1 TNF MIR6721 MIR5004 SAPCD1 SNORD48 HLA-DRB6 LY6G6D B3GALT4 EHMT2 HLA-DRB1 WDR46 CLIC1 LTB DXO LOC100507547 TAPBP DDX39B-AS1 DAXX PPT2-EGFL8 VARS RING1 HLA-DQA2 MIR219A1 C6orf48 PSMB8-AS1 AGER BTNL2
dgv10404n54	Chr.6:31312550 - 32516591 on Build GRCh38	Loss	MCCD1 LY6G5C SNORD84 FKBPL LY6G5B SNORD117 C2-AS1 VWA7 CYP21A2 MSH5 MIR4646 MSH5-SAPCD1 LY6G6E LOC102725068 NELFE HSPA1A TNXB PBX2 HLA-DRA C4A EGFL8 HCG23 C6orf47 CFB MIR6833 SNORA38 NEU1 AGPAT1 LST1 GPANK1 DDAH2 GPSM3 TNXA PPT2 APOM BAG6 NCR3 LY6G6C SKIV2L C4B LOC101929163 LSM2 MICA C2 SNORD52 C6orf25 HSPA1L LTA HCP5 HLA-B ATF6B PRRC2A SAPCD1-AS1 DDX39B ATP6V1G2-DDX39B LOC100287329 NFKBIL1 ABHD16A RNF5 AIF1 MIR6832 TNF MIR6891 MIR6721 STK19 SAPCD1 SNORD48 LY6G6D HSPA1B EHMT2 ATP6V1G2 C6orf10 ZBTB12 MIR1236 SLC44A4 CLIC1 LY6G6F LTB DXO LOC100507547 MICB CSNK2B NOTCH4 DDX39B-AS1 PPT2-EGFL8 VARS CYP21A1P HCG26 C6orf48 AGER PRRT1 BTNL2