Name: [Hs00418164_cn] [PPT2]
Creator: Thermo Fisher Scientific
Keywords: [PPT2] Assay, [palmitoyl-protein thioesterase 2] Assay

Genomic Map

LOADING...

×

Back To Top

Assay Details

Target Gene Details

Entrez Gene ID:	9374
Gene Name:	palmitoyl-protein thioesterase 2
Gene Aliases:	C6orf8, G14, PPT-2
Location:	Chr.6:32153452-32163681 on Build GRCh38
Assay Gene Location:	Overlaps Exon 5 - Intron 5

Gene Symbol	Transcript Accession	Protein ID
PPT2	NM_001204103.1	NP_001191032.1
	NM_005155.6	NP_005146.4
	NM_138717.2	NP_619731.2
	AF020543.1	AAB80730.1
	AL110128.1	CAB53659.1
	BC001355.2	AAH01355.1
	CR533546.1	CAG38577.1
	Y17958.1	CAB46981.1

Target Gene Details

Entrez Gene ID:	100532746
Gene Name:	PPT2-EGFL8 readthrough (NMD candidate)
Gene Aliases:	-
Location:	Chr.6:32153999-32168285 on Build GRCh38
Assay Gene Location:	Overlaps Exon 4 - Intron 4

Gene Symbol	Transcript Accession	Protein ID
PPT2-EGFL8	NR_037861.1
	AB209572.1	BAD92809.1
	AF020544.1	AAB80731.1
	AK290473.1
	AK296648.1
	AK307427.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv830629	Chr.6:32076201 - 32222010 on Build GRCh38	Loss	AGPAT1 TNXB GPSM3 EGFL8 RNF5 MIR6833 PPT2 PRRT1 NOTCH4 PPT2-EGFL8 AGER PBX2 FKBPL LOC100507547 ATF6B MIR6721
dgv10463n54	Chr.6:31817661 - 32683279 on Build GRCh38	Loss	HLA-DQB1 GPSM3 EGFL8 C6orf10 SKIV2L HSPA1A STK19 LOC100507547 CFB SLC44A4 MIR6721 HLA-DRB1 HLA-DRA CYP21A1P C4A NEU1 MIR1236 HLA-DRB6 PPT2 PRRT1 NOTCH4 ZBTB12 AGER C4B BTNL2 FKBPL ATF6B AGPAT1 TNXB HLA-DRB5 CYP21A2 MIR6833 LOC101929163 C6orf48 NELFE HLA-DQA1 HSPA1B EHMT2 RNF5 HCG23 C2-AS1 C2 TNXA SNORD48 PPT2-EGFL8 DXO PBX2 HLA-DQB1-AS1 SNORD52
dgv10472n54	Chr.6:31985690 - 32812026 on Build GRCh38	Loss	HLA-DQB1 AGPAT1 TNXB HLA-DRB5 CYP21A2 MIR3135B GPSM3 EGFL8 MIR6833 LOC101929163 C6orf10 LOC100507547 MIR6721 HLA-DRB1 HLA-DQB2 HLA-DRA CYP21A1P HLA-DQA2 C4A HLA-DQA1 RNF5 HCG23 HLA-DRB6 PPT2 PRRT1 NOTCH4 TNXA PPT2-EGFL8 AGER C4B BTNL2 PBX2 FKBPL ATF6B HLA-DQB1-AS1
esv2759415	Chr.6:31903735 - 32241336 on Build GRCh38	Gain+Loss	AGPAT1 TNXB CYP21A2 GPSM3 EGFL8 MIR6833 SKIV2L STK19 NELFE LOC100507547 CFB MIR6721 CYP21A1P C4A RNF5 MIR1236 C2-AS1 PPT2 PRRT1 C2 NOTCH4 TNXA PPT2-EGFL8 AGER C4B DXO PBX2 FKBPL ATF6B
nsv1126749	Chr.6:31457323 - 32594423 on Build GRCh38	Deletion	ATP6V1G2 DDAH2 GPSM3 EGFL8 C6orf10 MCCD1 SNORD117 SKIV2L HSPA1A STK19 LOC100507547 CFB SLC44A4 SAPCD1 MIR6721 CLIC1 LY6G6E HLA-DRB1 HLA-DRA CYP21A1P LOC102725068 C4A TNF NEU1 SNORA38 SAPCD1-AS1 MIR1236 MSH5-SAPCD1 HLA-DRB6 MIR6832 PPT2 PRRT1 NOTCH4 ZBTB12 ABHD16A LY6G5C ATP6V1G2-DDX39B AGER C4B BTNL2 HCG26 FKBPL ATF6B SNORD84 AGPAT1 TNXB HLA-DRB5 LTB CYP21A2 VWA7 VARS CSNK2B MICB MIR6833 LOC101929163 LTA PRRC2A C6orf48 NELFE DDX39B LY6G6F HSPA1L LY6G5B HSPA1B HCP5 C6orf47 LY6G6C MSH5 NFKBIL1 EHMT2 RNF5 HCG23 LY6G6D C2-AS1 C6orf25 DDX39B-AS1 C2 NCR3 TNXA SNORD48 PPT2-EGFL8 AIF1 MIR4646 DXO PBX2 APOM LSM2 BAG6 LOC100287329 GPANK1 LST1 SNORD52
nsv1073969	Chr.6:31456422 - 33480523 on Build GRCh38	Deletion	ATP6V1G2 GPSM3 EGFL8 HLA-DOA PSMB8 RGL2 C6orf10 MCCD1 PSMB9 SYNGAP1 LOC100507547 CFB SLC44A4 MIR6721 LY6G6E RPS18 HLA-DOB LOC102725068 TAP1 C4A NEU1 MIR1236 MSH5-SAPCD1 MIR6832 PPT2 NOTCH4 BTNL2 HCG26 FKBPL SNORD84 TNXB LTB CYP21A2 VWA7 MIR3135B MICB MIR6833 DAXX MIR219A1 PSMB8-AS1 PRRC2A SLC39A7 HLA-DQB2 HLA-DQA2 WDR46 CUTA MIR5004 LY6G5B HLA-DQA1 HSPA1B HCP5 RNF5 HCG23 C2-AS1 DDX39B-AS1 C2 TAP2 NCR3 PPT2-EGFL8 AIF1 MIR4646 DXO PBX2 HSD17B8 LSM2 LOC100287329 SNORD52 HLA-DQB1 RXRB MIR6873 DDAH2 MIR6834 ZBTB9 PFDN6 SNORD117 SKIV2L HCG24 HSPA1A STK19 SAPCD1 CLIC1 HLA-DRB1 HLA-DRA CYP21A1P TNF HLA-DPB1 SNORA38 SAPCD1-AS1 HLA-DRB6 PRRT1 HLA-DPA1 ZBTB12 ABHD16A LY6G5C ATP6V1G2-DDX39B AGER C4B B3GALT4 ATF6B KIFC1 AGPAT1 HLA-DRB5 VARS CSNK2B LOC101929163 LTA HLA-DPB2 COL11A2 C6orf48 NELFE DDX39B VPS52 LY6G6F HSPA1L HLA-DMB HLA-DMA C6orf47 LY6G6C MSH5 ZBTB22 NFKBIL1 TAPBP EHMT2 PHF1 RING1 HCG25 BRD2 LY6G6D PPP1R2P1 C6orf25 TNXA SNORD48 APOM LOC100294145 BAG6 HLA-DQB1-AS1 GPANK1 LST1
nsv602104	Chr.6:32096949 - 32203906 on Build GRCh38	Loss	AGPAT1 TNXB GPSM3 EGFL8 RNF5 MIR6833 PPT2 PRRT1 NOTCH4 PPT2-EGFL8 AGER PBX2 FKBPL LOC100507547 ATF6B MIR6721
nsv1112900	Chr.6:31455323 - 33480423 on Build GRCh38	Deletion	ATP6V1G2 GPSM3 EGFL8 HLA-DOA PSMB8 RGL2 C6orf10 MCCD1 PSMB9 SYNGAP1 LOC100507547 CFB SLC44A4 MIR6721 LY6G6E RPS18 HLA-DOB LOC102725068 TAP1 C4A NEU1 MIR1236 MSH5-SAPCD1 MIR6832 PPT2 NOTCH4 BTNL2 HCG26 FKBPL SNORD84 TNXB LTB CYP21A2 VWA7 MIR3135B MICB MIR6833 DAXX MIR219A1 PSMB8-AS1 PRRC2A SLC39A7 HLA-DQB2 HLA-DQA2 WDR46 CUTA MIR5004 LY6G5B HLA-DQA1 HSPA1B HCP5 RNF5 HCG23 C2-AS1 DDX39B-AS1 C2 TAP2 NCR3 PPT2-EGFL8 AIF1 MIR4646 DXO PBX2 HSD17B8 LSM2 LOC100287329 SNORD52 HLA-DQB1 RXRB MIR6873 DDAH2 MIR6834 ZBTB9 PFDN6 SNORD117 SKIV2L HCG24 HSPA1A STK19 SAPCD1 CLIC1 HLA-DRB1 HLA-DRA CYP21A1P TNF HLA-DPB1 SNORA38 SAPCD1-AS1 HLA-DRB6 PRRT1 HLA-DPA1 ZBTB12 ABHD16A LY6G5C ATP6V1G2-DDX39B AGER C4B B3GALT4 ATF6B KIFC1 AGPAT1 HLA-DRB5 VARS CSNK2B LOC101929163 LTA HLA-DPB2 COL11A2 C6orf48 NELFE DDX39B VPS52 LY6G6F HSPA1L HLA-DMB HLA-DMA C6orf47 LY6G6C MSH5 ZBTB22 NFKBIL1 TAPBP EHMT2 PHF1 RING1 HCG25 BRD2 LY6G6D PPP1R2P1 C6orf25 TNXA SNORD48 APOM LOC100294145 BAG6 HLA-DQB1-AS1 GPANK1 LST1
dgv10404n54	Chr.6:31312550 - 32516591 on Build GRCh38	Loss	ATP6V1G2 DDAH2 GPSM3 EGFL8 C6orf10 MCCD1 SNORD117 SKIV2L HSPA1A STK19 LOC100507547 CFB SLC44A4 SAPCD1 MIR6721 CLIC1 LY6G6E HLA-DRA CYP21A1P LOC102725068 C4A TNF NEU1 SNORA38 SAPCD1-AS1 MIR1236 MSH5-SAPCD1 MIR6832 PPT2 PRRT1 NOTCH4 ZBTB12 ABHD16A LY6G5C ATP6V1G2-DDX39B AGER C4B BTNL2 HCG26 FKBPL ATF6B SNORD84 AGPAT1 TNXB LTB CYP21A2 VWA7 VARS CSNK2B MICB MIR6833 LOC101929163 LTA MICA PRRC2A C6orf48 MIR6891 NELFE DDX39B LY6G6F HSPA1L LY6G5B HSPA1B HCP5 C6orf47 LY6G6C MSH5 NFKBIL1 EHMT2 RNF5 HCG23 LY6G6D C2-AS1 C6orf25 DDX39B-AS1 C2 NCR3 TNXA SNORD48 PPT2-EGFL8 AIF1 MIR4646 DXO PBX2 APOM HLA-B LSM2 BAG6 LOC100287329 GPANK1 LST1 SNORD52