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See other SDF4 CNV Assays ›
Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1223994 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00418457_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK000717.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TTLL10-AS1 MIR429 MIR200B TAS1R3 SCNN1D C1orf159 LINC01342 CPSF3L LOC100288175 TNFRSF18 LOC105378948 ACAP3 SDF4 AGRN RNF223 MIR200A FAM132A MIR6727 PUSL1 TNFRSF4 UBE2J2 MIR6726 TTLL10 CPTP B3GALT6
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss TTLL10-AS1 LINC00115 CDK11B LOC100288069 SCNN1D C1orf159 LINC01342 SAMD11 FAM87B PERM1 CPSF3L LOC100288175 NOC2L PLEKHN1 TNFRSF18 NADK LOC105378948 SDF4 AGRN ANKRD65 HES4 RNF223 MIR200A AURKAIP1 LOC107985728 LOC148413 ATAD3B LOC284600 CCNL2 MMP23A TMEM88B LOC102724312 TNFRSF4 MIB2 UBE2J2 ISG15 CPTP B3GALT6 MIR429 MMP23B MIR200B LINC01128 TAS1R3 LOC100287934 SLC35E2B LOC100130417 ACAP3 KLHL17 SLC35E2 FAM132A FAM41C ATAD3C MIR6727 MIR6808 ATAD3A PUSL1 MXRA8 LOC107985729 MRPL20 MIR6726 TTLL10 VWA1 SSU72 CDK11A FNDC10 TMEM240 DVL1
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss TTLL10-AS1 PRKCZ SCNN1D C1orf159 LINC01342 FAM87B PERM1 CPSF3L LOC100288175 NOC2L PLEKHN1 TNFRSF18 LOC105378591 SDF4 MIR6723 HES4 RNF223 MIR200A MIR1302-2 AURKAIP1 LOC100133331 LOC107985728 LOC101928626 TMEM52 LOC105378949 CCNL2 LOC100129534 LOC102724312 CFAP74 UBE2J2 GABRD MIR429 MMP23B MIR200B WASH7P SLC35E2B OR4F29 KLHL17 MTND2P28 FAM132A FAM41C FAM138A PUSL1 LOC100132287 MXRA8 MTND1P23 LOC107985729 MRPL20 FNDC10 MORN1 DVL1 LOC102725121 LINC00115 CDK11B LOC100288069 SAMD11 DDX11L1 FAAP20 LOC105378947 LOC107984841 NADK LOC105378948 AGRN ANKRD65 MIR6859-1 LOC729737 LOC105378589 OR4F16 LOC148413 ATAD3B LOC284600 MMP23A TMEM88B TNFRSF4 MIB2 ISG15 CPTP B3GALT6 GNB1 CALML6 LINC01128 TAS1R3 LOC100287934 SKI MIR6859-2 LOC100130417 ACAP3 OR4F5 SLC35E2 ATAD3C MIR6727 MIR6808 ATAD3A LOC100134822 LOC105378592 LOC100506504 MIR6726 TTLL10 VWA1 SSU72 CDK11A TMEM240
nsv544965 Chr.1:1217251 - 1306704 on Build GRCh38 Loss FAM132A UBE2J2 MIR6726 ACAP3 SDF4 B3GALT6 SCNN1D
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss TTLL10-AS1 LINC00115 MIR429 MIR200B LINC01128 C1orf159 LINC01342 SAMD11 FAM87B PERM1 LOC100288175 NOC2L PLEKHN1 TNFRSF18 LOC100130417 LOC105378948 SDF4 KLHL17 AGRN HES4 RNF223 MIR200A FAM132A LOC107985728 FAM41C LOC284600 TNFRSF4 UBE2J2 TTLL10 ISG15 B3GALT6
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TTLL10-AS1 MIR429 MMP23B MIR200B CDK11B TAS1R3 SCNN1D C1orf159 LINC01342 CPSF3L TNFRSF18 ACAP3 SDF4 ANKRD65 MIR200A AURKAIP1 FAM132A ATAD3C MIR6727 LOC148413 ATAD3B MIR6808 ATAD3A CCNL2 TMEM88B PUSL1 LOC102724312 MXRA8 TNFRSF4 MIB2 LOC107985729 MRPL20 UBE2J2 MIR6726 TTLL10 VWA1 SSU72 CPTP B3GALT6 FNDC10 TMEM240 DVL1
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain TTLL10-AS1 MIR429 MIR200B TAS1R3 SCNN1D C1orf159 LINC01342 SAMD11 PERM1 CPSF3L LOC100288175 NOC2L PLEKHN1 TNFRSF18 LOC100130417 LOC105378948 ACAP3 SDF4 KLHL17 AGRN ANKRD65 HES4 RNF223 MIR200A AURKAIP1 FAM132A LOC107985728 MIR6727 LOC148413 MIR6808 LOC284600 CCNL2 TMEM88B PUSL1 MXRA8 TNFRSF4 MRPL20 UBE2J2 MIR6726 TTLL10 ISG15 CPTP B3GALT6 DVL1
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain TTLL10-AS1 FAM132A MIR429 MIR200B SCNN1D C1orf159 LINC01342 TNFRSF4 TNFRSF18 UBE2J2 LOC105378948 TTLL10 SDF4 B3GALT6 RNF223 MIR200A
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss TTLL10-AS1 FAM132A MIR429 MIR200B SCNN1D C1orf159 LINC01342 TNFRSF4 TNFRSF18 UBE2J2 MIR6726 TTLL10 ACAP3 SDF4 B3GALT6 RNF223 MIR200A
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain TTLL10-AS1 FAM132A MIR429 MIR6727 MIR200B SCNN1D CPSF3L PUSL1 TNFRSF4 TNFRSF18 UBE2J2 MIR6726 TTLL10 ACAP3 SDF4 B3GALT6 MIR200A
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10-AS1 TNFRSF4 TNFRSF18 TTLL10 SDF4 B3GALT6

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