Name: [Hs00422921_cn] [IRF3]
Creator: Thermo Fisher Scientific
Keywords: [IRF3] Assay, [interferon regulatory factor 3] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	3661
Gene Name:	interferon regulatory factor 3
Gene Aliases:	IIAE7
Location:	Chr.19:49659569-49665875 on Build GRCh38
Assay Gene Location:	Within Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
IRF3	NM_001197122.1	3	499	NP_001184051.1
	NM_001197123.1	3	557	NP_001184052.1
	NM_001197124.1	3	499	NP_001184053.1
	NM_001197125.1	2	326	NP_001184054.1
	NM_001197126.1			NP_001184055.1
	NM_001197127.1	2	326	NP_001184056.1
	NM_001197128.1			NP_001184057.1
	NM_001571.5	3	499	NP_001562.1
	NR_045568.1	3	646
	XM_006723197.1	3	477	XP_006723260.1
	XM_006723198.1	3	413	XP_006723261.1
	XM_006723200.1	2	162	XP_006723263.1
	XM_006723201.1	2	235	XP_006723264.1
	XM_006723202.2	3	384	XP_006723265.1
	XM_017026766.1	3	468	XP_016882255.1
	XM_017026767.1	3	413	XP_016882256.1
	AB102884.1			BAD89413.1
	AB102887.1	2	246	BAD89416.1
	AK057577.1	2	1265
	AK292027.1	3	628
	AK314421.1	3	412
	BC000660.2	3	401	AAH00660.1
	BC009395.2	3	426	AAH09395.1
	BC071721.1	2	588	AAH71721.1
	BP347627.1	2	167
	CB961512.1	3	507
	HM357932.1	3	387
	HM357933.1
	HM357934.1
	HM357935.1	2	156
	HM357936.1	3	329
	HM357937.1	2	156
	Z56281.1	3	292	CAA91227.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv469715	Chr.19:49572544 - 49730286 on Build GRCh38	Gain+Loss	CPT1C IRF3 RRAS BCL2L12 ADM5 PRR12 PRRG2 PRMT1 SCAF1 MIR5088 NOSIP
nsv833865	Chr.19:49572545 - 49730286 on Build GRCh38	Gain+Loss	CPT1C IRF3 RRAS BCL2L12 ADM5 PRR12 PRRG2 PRMT1 SCAF1 MIR5088 NOSIP
nsv9739	Chr.19:47901840 - 50143063 on Build GRCh38	Gain+Loss	LOC100287477 SPHK2 SIGLEC11 CGB5 CCDC155 SNORD33 SNAR-A13 TMEM143 SNAR-C1 SNAR-A14 FAM83E BSPH1 GFY ELSPBP1 PRR12 SNAR-B1 RPL18 RRAS TSKS SNAR-A6 PLEKHA4 SNORD32A LMTK3 SNAR-A4 PTOV1 IRF3 BAX SULT2B1 SNAR-C5 ZNF473 IL4I1 VRK3 CGB3 CPT1C FTL RPS11 MAMSTR PIH1D1 MED25 SNRNP70 SNAR-C2 AP2A1 CD37 FUT1 MIR5088 LIG1 MIR6799 CARD8 LOC105447645 DHDH LIN7B PLA2G4C-AS1 SEC1P SLC17A7 MIR4750 PPFIA3 MIR4751 AKT1S1 GRWD1 CGB8 FGF21 GRIN2D SNAR-A10 TEAD2 LOC105372430 PNKP CYTH2 TBC1D17 PRMT1 C19orf73 SNAR-A7 LOC101059948 HSD17B14 MIR4749 SNAR-A2 SPACA4 SNAR-C3 DKKL1 C19orf68 RPL13A SNORD34 CCDC114 SNORD35B TULP2 GYS1 SNORD35A SNAR-D SNAR-A3 SYNGR4 CGB1 SNAR-A1 SNAR-G1 PLA2G4C CA11 ATF5 ALDH16A1 PTOV1-AS2 PPP1R15A CARD8-AS1 SNAR-G2 NOSIP CGB2 NUCB1 IZUMO1 ADM5 FUT2 CGB7 KCNJ14 PRRG2 TRPM4 SNAR-C4 DBP FUZ SNAR-A5 MIR6798 PTOV1-AS1 MIR6800 NUP62 FCGRT RUVBL2 SNAR-A8 SCAF1 SIGLEC16 NTF4 HRC LHB KDELR1 BCL2L12 RASIP1 SNAR-B2 SLC6A16 MIR150 EMP3 PTH2 KCNA7 BCAT2 FLJ26850 SNAR-A12 RCN3 SNAR-A11 NUCB1-AS1 NTN5 MIR4324 LOC101928295 ZNF114 SNAR-A9 FLT3LG CABP5
nsv470150	Chr.19:49618821 - 49856789 on Build GRCh38	Gain	CPT1C RRAS BCL2L12 ADM5 TSKS MED25 AP2A1 FUZ PRMT1 MIR5088 PTOV1 PTOV1-AS1 PTOV1-AS2 IRF3 MIR6800 MIR4749 PRR12 MIR6799 SCAF1
nsv833864	Chr.19:49551790 - 49733819 on Build GRCh38	Gain	CPT1C IRF3 RRAS BCL2L12 ADM5 PRR12 PRRG2 PRMT1 SCAF1 MIR5088 NOSIP
nsv953600	Chr.19:49555044 - 49938043 on Build GRCh38	Deletion	CPT1C ADM5 MED25 AP2A1 PNKP PRRG2 TBC1D17 FUZ PRMT1 MIR5088 PTOV1-AS1 MIR6800 NUP62 MIR4749 PRR12 MIR6799 SCAF1 RRAS BCL2L12 TSKS MIR4750 ATF5 PTOV1 MIR4751 PTOV1-AS2 IRF3 AKT1S1 IL4I1 NOSIP
nsv1160655	Chr.19:49489110 - 49841830 on Build GRCh38	Deletion	CPT1C RPS11 ADM5 MED25 SNORD33 AP2A1 PRRG2 FUZ PRMT1 MIR5088 PTOV1-AS1 MIR6800 FCGRT PRR12 MIR6799 RPL13A SNORD34 SCAF1 SNORD35B RRAS BCL2L12 TSKS SNORD35A MIR150 SNORD32A RCN3 IRF3 NOSIP
nsv828578	Chr.19:49560777 - 49680548 on Build GRCh38	Loss	IRF3 RRAS BCL2L12 PRR12 PRRG2 PRMT1 SCAF1 NOSIP