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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2186750 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00464255_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 10 - Exon 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication SNHG9 RPS2 LOC105371038 CASKIN1 SNHG19 TPSAB1 HN1L ATP6V0C RAB26 FAM173A CEMP1 SNRNP25 DNASE1L2 LOC652276 E4F1 NTHL1 DECR2 SSTR5-AS1 TELO2 HBA1 MPG FAM234A TRAF7 PDPK1 HBQ1 MSLN KCTD5 MLST8 IFT140 TSR3 MCRIP2 SNORA78 SSTR5 TSC2 MRPL28 MIR940 LOC105371049 PRR25 MIR6511B1 HAGHL WFIKKN1 NTN3 NME3 LMF1 MIR4717 MRPS34 LOC105371047 RGS11 POLR3K ECI1 CLCN7 NARFL FAHD1 MIR3178 LOC107984876 RAB40C ABCA3 GNPTG TBC1D24 SYNGR3 LOC729652 MIR6768 HBA2 IGFALS WDR24 MIR3176 NHLRC4 LOC105371045 NOXO1 LOC101929280 CHTF18 CAPN15 CRAMP1 HAGH TPSB2 PTX4 CCDC154 TPSG1 EME2 LOC107987233 LMF1-AS1 RPL3L MSRB1 WDR90 TBL3 RPL23AP5 C1QTNF8 PGP STUB1 ZNF598 CCDC78 FBXL16 HS3ST6 ERVK13-1 SNORD60 RHBDF1 LOC106660606 LINC00235 MEIOB LOC105371046 MIR662 RAB11FIP3 SPSB3 ABCA17P WASIR2 TMEM204 RHOT2 SNORA64 LUC7L PRSS29P RNPS1 SOX8 RPUSD1 PRR35 MIR5587 MIR1225 UBE2I NME4 JMJD8 DDX11L10 RHBDL1 MAPK8IP3 LOC105371184 METTL26 BAIAP3 AXIN1 LINC00254 LOC100287175 MIR3180-5 MIR6767 HBZ PKD1 MIR4516 NPRL3 CACNA1H CCNF PDIA2 NPW LOC100134368 SLC9A3R2 SNORA10 TMEM8A C16orf59 GFER NDUFB10 FLJ42627 PIGQ NUBP2 BRICD5 ARHGDIG UNKL MIR6859-4 HBM PRSS27 MIR3677 RNF151 C16orf91 METRN TPSD1 AMDHD2 GNG13 MIR3177
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss ZNF598 MIR4717 SNORD60 CASKIN1 ECI1 LOC106660606 SNHG19 MIR3180-5 RAB26 ABCA3 DNASE1L2 PKD1 MIR4516 E4F1 SYNGR3 NTHL1 NPW SLC9A3R2 NOXO1 GFER RNPS1 TRAF7 BRICD5 MIR1225 MLST8 MIR3677 TSC2 TBL3 MIR940 LOC105371049 MIR6511B1 PGP
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss SNORD60 CASKIN1 TRAF7 ECI1 BRICD5 MIR1225 SNHG19 MIR3180-5 RAB26 MLST8 DNASE1L2 PKD1 MIR4516 E4F1 TSC2 LOC105371049 MIR6511B1 PGP
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss RNPS1 SNORD60 CASKIN1 TRAF7 ECI1 LOC106660606 BRICD5 SNHG19 RAB26 MLST8 MIR3677 DNASE1L2 E4F1 MIR940 PGP
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss PKD1 MIR4516 SNORD60 CASKIN1 TRAF7 TSC2 MIR1225 SNHG19 LOC105371049 MIR3180-5 MIR6511B1 RAB26
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR4717 SNORD60 CASKIN1 ECI1 LOC106660606 SNHG19 MIR3180-5 MIR3178 ATP6V0C RAB26 CEMP1 ABCA3 MIR6767 DNASE1L2 PKD1 LOC652276 MIR4516 TBC1D24 E4F1 LOC729652 MIR6768 ABCA17P CCNF C16orf59 RNPS1 TRAF7 PDPK1 BRICD5 MIR1225 MLST8 MIR3677 TSC2 MIR940 LOC105371049 MIR6511B1 NTN3 AMDHD2 PGP
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss MIR3677 DNASE1L2 E4F1 RNPS1 CASKIN1 TRAF7 ECI1 LOC106660606 BRICD5 MIR940 PGP MLST8
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MIR4717 RNPS1 SNORD60 CASKIN1 TRAF7 ECI1 LOC106660606 BRICD5 SNHG19 RAB26 MLST8 ABCA3 MIR3677 DNASE1L2 E4F1 MIR940 PGP

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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