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Gene Symbol
CLIC1
Assay Reference Genome
Location

Chr.6:31733681 on build GRCh38
Cytoband
6p21.33
Assay ID Hs00469002_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 1192

Gene Name:

 chloride intracellular channel 1

Gene Aliases:

 G6, NCC27

Location:

 Chr.6:31730581-31737318 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CLIC1 NM_001287593.1 NP_001274522.1
NM_001287594.1 NP_001274523.1
NM_001288.4 NP_001279.2
AF034607.1 AAD20437.1
AF109197.1 AAD26137.1
AI192421.1
AK129773.1
AK223379.1 BAD97099.1
AK314014.1
BC064527.1 AAH64527.1
BC095469.1 AAH95469.1
CB124154.1
CR542071.1 CAG46868.1
CX783058.1
HY057217.1
U93205.1 AAC25675.1
X87689.1 CAA61020.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion CSNK2B HSPA1A SLC44A4 LY6G6E C6orf25 SAPCD1-AS1 NCR3 HLA-DRB6 LTA SKIV2L HCG26 GPANK1 LY6G6F SNORD117 HLA-DRA MIR6832 AGPAT1 VARS PRRT1 LOC101929163 C2-AS1 DDX39B-AS1 LY6G5C MCCD1 APOM MICB SNORD48 C6orf47 LOC100287329 ATF6B C6orf48 PPT2-EGFL8 STK19 ABHD16A PPT2 ATP6V1G2-DDX39B PBX2 BTNL2 LTB AIF1 SNORA38 AGER MIR6833 HLA-DRB1 HCG23 CYP21A2 SAPCD1 NEU1 DDX39B LY6G6D C2 TNXA NOTCH4 C6orf10 EHMT2 BAG6 DXO CLIC1 LY6G5B CYP21A1P TNXB ZBTB12 LST1 MSH5 EGFL8 C4A HCP5 MIR1236 HSPA1B ATP6V1G2 NFKBIL1 NELFE DDAH2 LOC102725068 TNF GPSM3 SNORD52 SNORD84 VWA7 CFB C4B PRRC2A FKBPL RNF5 LY6G6C MSH5-SAPCD1 HLA-DRB5 LSM2 HSPA1L MIR6721 MIR4646 LOC100507547
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss CSNK2B HSPA1A SLC44A4 LY6G6E C6orf25 SAPCD1-AS1 NCR3 LTA SKIV2L HCG26 GPANK1 LY6G6F SNORD117 MIR6832 VARS C2-AS1 DDX39B-AS1 HLA-B LY6G5C MCCD1 APOM MICA MICB SNORD48 C6orf47 LOC100287329 C6orf48 MIR6891 STK19 ABHD16A ATP6V1G2-DDX39B LTB AIF1 SNORA38 CYP21A2 SAPCD1 NEU1 DDX39B LY6G6D C2 TNXA EHMT2 BAG6 DXO CLIC1 LY6G5B CYP21A1P TNXB ZBTB12 LST1 MSH5 C4A HCP5 MIR1236 HSPA1B ATP6V1G2 NFKBIL1 NELFE DDAH2 LOC102725068 TNF SNORD52 SNORD84 VWA7 CFB C4B PRRC2A LY6G6C MSH5-SAPCD1 LSM2 HSPA1L MIR4646
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion SLC44A4 LY6G6E LOC100294145 MIR3135B SLC39A7 HSD17B8 PPP1R2P1 C6orf25 MIR5004 SAPCD1-AS1 SKIV2L MIR6832 AGPAT1 HLA-DQA1 DDX39B-AS1 MCCD1 APOM MICB LOC100287329 PPT2 ZBTB22 VPS52 ZBTB9 BTNL2 LTB AGER MIR6833 CYP21A2 DDX39B LY6G6D TAPBP SYNGAP1 TNXA HLA-DPA1 NOTCH4 PSMB9 BAG6 LY6G5B CYP21A1P TNXB ZBTB12 LST1 HLA-DMA HCP5 RXRB HLA-DQB1-AS1 HSPA1B NFKBIL1 HLA-DPB1 LOC102725068 TNF COL11A2 VWA7 CUTA FKBPL MIR6834 MSH5-SAPCD1 HLA-DRB5 LSM2 MIR6721 HCG24 MIR4646 CSNK2B HSPA1A RING1 MIR219A1 PSMB8-AS1 NCR3 HLA-DRB6 LTA HCG26 GPANK1 LY6G6F SNORD117 HLA-DRA HLA-DQB1 HLA-DQB2 VARS RGL2 PRRT1 LOC101929163 HLA-DOA MIR6873 C2-AS1 HLA-DPB2 LY6G5C DAXX SNORD48 C6orf47 ATF6B C6orf48 TAP2 PPT2-EGFL8 STK19 ABHD16A HLA-DQA2 ATP6V1G2-DDX39B PBX2 AIF1 HCG25 SNORA38 TAP1 HLA-DMB HLA-DRB1 HCG23 SAPCD1 NEU1 KIFC1 PFDN6 C2 RPS18 WDR46 C6orf10 EHMT2 DXO CLIC1 MSH5 EGFL8 C4A MIR1236 ATP6V1G2 PSMB8 NELFE B3GALT4 BRD2 DDAH2 GPSM3 HLA-DOB SNORD52 SNORD84 CFB C4B PHF1 PRRC2A RNF5 LY6G6C HSPA1L LOC100507547
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion SLC44A4 LY6G6E LOC100294145 MIR3135B SLC39A7 HSD17B8 PPP1R2P1 C6orf25 MIR5004 SAPCD1-AS1 SKIV2L MIR6832 AGPAT1 HLA-DQA1 DDX39B-AS1 MCCD1 APOM MICB LOC100287329 PPT2 ZBTB22 VPS52 ZBTB9 BTNL2 LTB AGER MIR6833 CYP21A2 DDX39B LY6G6D TAPBP SYNGAP1 TNXA HLA-DPA1 NOTCH4 PSMB9 BAG6 LY6G5B CYP21A1P TNXB ZBTB12 LST1 HLA-DMA HCP5 RXRB HLA-DQB1-AS1 HSPA1B NFKBIL1 HLA-DPB1 LOC102725068 TNF COL11A2 VWA7 CUTA FKBPL MIR6834 MSH5-SAPCD1 HLA-DRB5 LSM2 MIR6721 HCG24 MIR4646 CSNK2B HSPA1A RING1 MIR219A1 PSMB8-AS1 NCR3 HLA-DRB6 LTA HCG26 GPANK1 LY6G6F SNORD117 HLA-DRA HLA-DQB1 HLA-DQB2 VARS RGL2 PRRT1 LOC101929163 HLA-DOA MIR6873 C2-AS1 HLA-DPB2 LY6G5C DAXX SNORD48 C6orf47 ATF6B C6orf48 TAP2 PPT2-EGFL8 STK19 ABHD16A HLA-DQA2 ATP6V1G2-DDX39B PBX2 AIF1 HCG25 SNORA38 TAP1 HLA-DMB HLA-DRB1 HCG23 SAPCD1 NEU1 KIFC1 PFDN6 C2 RPS18 WDR46 C6orf10 EHMT2 DXO CLIC1 MSH5 EGFL8 C4A MIR1236 ATP6V1G2 PSMB8 NELFE B3GALT4 BRD2 DDAH2 GPSM3 HLA-DOB SNORD52 SNORD84 CFB C4B PHF1 PRRC2A RNF5 LY6G6C HSPA1L LOC100507547
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss CSNK2B HSPA1A SLC44A4 LY6G6E C6orf25 SAPCD1-AS1 NCR3 LTA SKIV2L HCG26 GPANK1 LY6G6F SNORD117 HLA-DRA MIR6832 AGPAT1 VARS PRRT1 LOC101929163 C2-AS1 DDX39B-AS1 HLA-B LY6G5C MCCD1 APOM MICA MICB SNORD48 C6orf47 LOC100287329 ATF6B C6orf48 MIR6891 PPT2-EGFL8 STK19 ABHD16A PPT2 ATP6V1G2-DDX39B PBX2 BTNL2 LTB AIF1 SNORA38 AGER MIR6833 HCG23 CYP21A2 SAPCD1 NEU1 DDX39B LY6G6D C2 TNXA NOTCH4 C6orf10 EHMT2 BAG6 DXO CLIC1 LY6G5B CYP21A1P TNXB ZBTB12 LST1 MSH5 EGFL8 C4A HCP5 MIR1236 HSPA1B ATP6V1G2 NFKBIL1 NELFE DDAH2 LOC102725068 TNF GPSM3 SNORD52 SNORD84 VWA7 CFB C4B PRRC2A FKBPL RNF5 LY6G6C MSH5-SAPCD1 LSM2 HSPA1L MIR6721 MIR4646 LOC100507547

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