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See other CPSF3L CNV Assays ›
Gene Symbol
CPSF3L
Assay Reference Genome
Location

Chr.1:1320472 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00472618_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 54973

Gene Name:

 cleavage and polyadenylation specific factor 3-like

Gene Aliases:

 CPSF73L, INT11, INTS11, RC-68, RC68

Location:

 Chr.1:1311585-1324687 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 5 - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CPSF3L NM_001256456.1 NP_001243385.1
NM_001256460.1 NP_001243389.1
NM_001256462.1 NP_001243391.1
NM_001256463.1 NP_001243392.1
NM_017871.5 NP_060341.2
XM_011541647.1 XP_011539949.1
XM_011541648.1 XP_011539950.1
XM_011541650.1 XP_011539952.1
XM_017001557.1 XP_016857046.1
XM_017001558.1 XP_016857047.1
AK021939.1 BAB13943.1
AK022675.1 2 653
AK023356.1 BAB14541.1
AK027767.1
AK056652.1
AK058018.1
AK092190.1
AK291387.1
AK297350.1
AL136813.1 CAB66747.1
BC007978.2 AAH07978.1
BC008041.2 AAH08041.1
BC020199.1 AAH20199.1
CR533557.1 CAG38588.1
DC295791.1
DC299237.1
DC299993.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100129534 LOC100288069 TNFRSF4 MIR200A LOC105378948 LOC284600 LOC107985728 LOC105378949 DVL1 PRKCZ FNDC10 SCNN1D LINC01342 NADK AURKAIP1 MIR429 MTND2P28 MTND1P23 SLC35E2B TAS1R3 WASH7P TMEM52 RNF223 SSU72 MMP23A CFAP74 MIR200B CPTP MXRA8 CDK11A LOC100134822 LOC101928626 MRPL20 TMEM88B PUSL1 TTLL10-AS1 FAM87B LINC01128 UBE2J2 FAM41C FAM138A LINC00115 KLHL17 MORN1 SDF4 OR4F16 LOC105378591 LOC100132287 CCNL2 LOC100130417 MIR6859-1 HES4 SAMD11 MMP23B B3GALT6 LOC100288175 NOC2L ATAD3B TNFRSF18 LOC100133331 MIR6726 CPSF3L CALML6 ATAD3A VWA1 PLEKHN1 DDX11L1 LOC100287934 CDK11B FAM132A LOC148413 MIR6808 LOC107984841 LOC729737 TTLL10 MIR6727 AGRN TMEM240 LOC105378589 GABRD C1orf159 GNB1 OR4F5 MIR6723 LOC105378592 SLC35E2 MIR1302-2 ACAP3 MIB2 LOC105378947 SKI ISG15 LOC107985729 ANKRD65 OR4F29 LOC102724312 PERM1 FAAP20 ATAD3C LOC100506504 LOC102725121 MIR6859-2
nsv544971 Chr.1:1294063 - 1351426 on Build GRCh38 Loss ACAP3 MIR6808 MIR6726 CPSF3L CPTP TAS1R3 MIR6727 DVL1 PUSL1
nsv544969 Chr.1:1290683 - 1374597 on Build GRCh38 Loss SCNN1D ACAP3 MIR6808 AURKAIP1 MIR6726 CPSF3L CPTP TAS1R3 MIR6727 DVL1 MXRA8 PUSL1
dgv7n100 Chr.1:1306835 - 1379057 on Build GRCh38 Loss ACAP3 MIR6808 AURKAIP1 CPSF3L CPTP TAS1R3 MIR6727 DVL1 MXRA8 PUSL1
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss C1orf159 TNFRSF4 MIR200A DVL1 PUSL1 TTLL10-AS1 ACAP3 TNFRSF18 UBE2J2 MIR6726 CPSF3L SCNN1D FAM132A MIR6808 LINC01342 AURKAIP1 SDF4 MIR429 TTLL10 TAS1R3 MIR6727 RNF223 MIR200B CPTP MXRA8 B3GALT6
dgv6n100 Chr.1:1301750 - 1362354 on Build GRCh38 Gain+Loss ACAP3 MIR6808 CPSF3L CPTP TAS1R3 MIR6727 DVL1 MXRA8 PUSL1
esv3584992 Chr.1:1314419 - 1330342 on Build GRCh38 Gain CPSF3L CPTP
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication C1orf159 TNFRSF4 MIR200A LOC105378948 PUSL1 TTLL10-AS1 ACAP3 TNFRSF18 UBE2J2 MIR6726 CPSF3L SCNN1D FAM132A LINC01342 SDF4 MIR429 TTLL10 TAS1R3 MIR6727 RNF223 AGRN MIR200B CPTP B3GALT6 LOC100288175
nsv1160788 Chr.1:1282706 - 1376336 on Build GRCh38 Deletion SCNN1D ACAP3 MIR6808 AURKAIP1 MIR6726 CPSF3L CPTP TAS1R3 MIR6727 DVL1 MXRA8 PUSL1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC100288069 TNFRSF4 MIR200A LOC105378948 LOC284600 LOC107985728 NOC2L ATAD3B DVL1 TNFRSF18 FNDC10 MIR6726 CPSF3L ATAD3A VWA1 SCNN1D PLEKHN1 LOC100287934 CDK11B FAM132A LOC148413 MIR6808 LINC01342 NADK AURKAIP1 MIR429 SLC35E2B TTLL10 TAS1R3 MIR6727 RNF223 SSU72 AGRN MMP23A TMEM240 MIR200B CPTP MXRA8 CDK11A C1orf159 MRPL20 TMEM88B SLC35E2 PUSL1 TTLL10-AS1 FAM87B ACAP3 MIB2 LINC01128 UBE2J2 FAM41C ISG15 LOC107985729 LINC00115 ANKRD65 LOC102724312 KLHL17 SDF4 CCNL2 PERM1 LOC100130417 ATAD3C HES4 SAMD11 MMP23B B3GALT6 LOC100288175
esv3890636 Chr.1:1304555 - 1353203 on Build GRCh38 Loss ACAP3 MIR6808 CPSF3L CPTP TAS1R3 MIR6727 DVL1 MXRA8 PUSL1
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion C1orf159 TNFRSF4 MIR200A MRPL20 TMEM88B ATAD3B DVL1 PUSL1 TTLL10-AS1 ACAP3 MIB2 TNFRSF18 UBE2J2 FNDC10 MIR6726 CPSF3L LOC107985729 ATAD3A VWA1 SCNN1D ANKRD65 LOC102724312 CDK11B FAM132A LOC148413 MIR6808 LINC01342 AURKAIP1 SDF4 MIR429 CCNL2 TTLL10 TAS1R3 MIR6727 ATAD3C SSU72 TMEM240 MIR200B MMP23B CPTP MXRA8 B3GALT6
nsv1000169 Chr.1:1281678 - 1362354 on Build GRCh38 Gain SCNN1D ACAP3 MIR6808 MIR6726 CPSF3L CPTP TAS1R3 MIR6727 DVL1 MXRA8 PUSL1
esv2758912 Chr.1:1263940 - 1384492 on Build GRCh38 Loss SCNN1D MIR6808 AURKAIP1 TAS1R3 MIR6727 DVL1 PUSL1 ACAP3 UBE2J2 MIR6726 CPSF3L CPTP MXRA8
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain C1orf159 TNFRSF4 MIR200A MRPL20 TMEM88B LOC105378948 LOC284600 LOC107985728 NOC2L DVL1 PUSL1 TTLL10-AS1 ACAP3 TNFRSF18 UBE2J2 MIR6726 ISG15 CPSF3L SCNN1D PLEKHN1 ANKRD65 KLHL17 FAM132A LOC148413 MIR6808 LINC01342 AURKAIP1 SDF4 MIR429 CCNL2 PERM1 TTLL10 TAS1R3 MIR6727 LOC100130417 RNF223 HES4 AGRN MIR200B SAMD11 CPTP MXRA8 B3GALT6 LOC100288175
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain SCNN1D FAM132A TNFRSF4 MIR200A SDF4 MIR429 TTLL10 MIR6727 PUSL1 TTLL10-AS1 ACAP3 TNFRSF18 UBE2J2 MIR200B MIR6726 CPSF3L B3GALT6

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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