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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2185132 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00480936_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 12 - Exon 12
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication AMDHD2 AXIN1 PRSS29P SNORA78 C16orf91 IGFALS TBC1D24 TPSB2 NPW MIR4516 CACNA1H LOC105371184 MLST8 MPG TPSAB1 DECR2 LOC105371049 MIR6768 LOC101929280 TMEM8A RPL3L ATP6V0C EME2 RPUSD1 ZNF598 SNRNP25 TPSG1 LOC106660606 SSTR5 LOC729652 LMF1 MIR3178 METTL26 CCDC154 PIGQ E4F1 CLCN7 SSTR5-AS1 GNG13 JMJD8 LOC100287175 MSRB1 RGS11 RNF151 POLR3K HBA2 ECI1 FLJ42627 HBA1 C16orf59 LOC100134368 PRSS27 ABCA3 NARFL SLC9A3R2 HBM RAB40C NHLRC4 NTHL1 CHTF18 MIR4717 TMEM204 TELO2 ERVK13-1 WDR90 TSC2 SNHG9 RPS2 ARHGDIG SNORA64 HBQ1 PRR35 NUBP2 BAIAP3 RHBDF1 TRAF7 WFIKKN1 HAGHL HS3ST6 MEIOB HBZ RAB26 LMF1-AS1 MAPK8IP3 IFT140 SNORA10 NME3 PDPK1 MIR1225 ABCA17P LOC105371038 RNPS1 HAGH RHBDL1 TPSD1 MIR6767 NOXO1 RPL23AP5 MIR3177 MIR940 DNASE1L2 DDX11L10 SOX8 TSR3 NPRL3 RAB11FIP3 LOC105371046 NDUFB10 SPSB3 UNKL LINC00254 MRPS34 WASIR2 MIR662 FBXL16 LUC7L FAM234A PRR25 HN1L CRAMP1 CEMP1 MIR6511B1 SNORD60 NTN3 STUB1 LOC105371047 MCRIP2 MIR6859-4 WDR24 LOC652276 FAHD1 C1QTNF8 CASKIN1 MRPL28 PKD1 MIR3180-5 NME4 METRN PDIA2 MIR3176 RHOT2 LINC00235 KCTD5 TBL3 SYNGR3 PTX4 CAPN15 MIR3677 MSLN UBE2I GFER LOC107984876 MIR5587 PGP CCNF LOC105371045 FAM173A GNPTG LOC107987233 BRICD5 SNHG19 CCDC78
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss TRAF7 E4F1 RAB26 ECI1 MIR6511B1 SNORD60 NPW MIR1225 MIR4516 MLST8 RNPS1 CASKIN1 ABCA3 SLC9A3R2 PKD1 MIR3180-5 LOC105371049 TBL3 SYNGR3 NTHL1 ZNF598 MIR4717 MIR3677 NOXO1 GFER MIR940 DNASE1L2 PGP TSC2 LOC106660606 BRICD5 SNHG19
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss MIR3180-5 LOC105371049 TRAF7 E4F1 RAB26 DNASE1L2 PGP ECI1 MIR6511B1 SNORD60 MIR1225 TSC2 MIR4516 MLST8 BRICD5 SNHG19 CASKIN1 PKD1
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss TRAF7 E4F1 RAB26 MIR3677 MIR940 DNASE1L2 PGP ECI1 SNORD60 LOC106660606 MLST8 BRICD5 SNHG19 RNPS1 CASKIN1
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR3180-5 LOC105371049 TRAF7 MIR6511B1 SNORD60 RAB26 MIR1225 TSC2 MIR4516 SNHG19 CASKIN1 PKD1
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss MIR940 DNASE1L2 TRAF7 PGP ECI1 E4F1 LOC106660606 MLST8 BRICD5 MIR3677 RNPS1 CASKIN1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR3178 AMDHD2 TRAF7 E4F1 RAB26 TBC1D24 CEMP1 ECI1 MIR6511B1 SNORD60 NTN3 PDPK1 C16orf59 MIR1225 MIR4516 ABCA17P MLST8 RNPS1 LOC652276 CASKIN1 ABCA3 PKD1 MIR3180-5 LOC105371049 MIR6768 ATP6V0C MIR6767 MIR4717 MIR3677 MIR940 DNASE1L2 PGP CCNF TSC2 LOC106660606 BRICD5 SNHG19 LOC729652
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion TRAF7 E4F1 RAB26 MIR4717 MIR3677 MIR940 DNASE1L2 PGP ECI1 SNORD60 LOC106660606 MLST8 BRICD5 SNHG19 RNPS1 CASKIN1 ABCA3

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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