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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2185132 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00480936_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 12 - Exon 12
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication RPS2 SNORD60 HBZ TPSD1 MIR6767 PRSS29P SNRNP25 SYNGR3 RAB40C LOC100134368 SNHG9 LOC106660606 HBQ1 WDR24 RHBDF1 FLJ42627 MIR940 LOC105371047 MIR662 NPW PTX4 WDR90 MRPL28 NTHL1 MIR4717 LOC105371049 CLCN7 GNPTG SNORA78 BRICD5 TMEM8A PDIA2 HN1L LOC729652 LOC105371045 DNASE1L2 SNHG19 MAPK8IP3 RHBDL1 MRPS34 RGS11 LOC100287175 LOC101929280 LUC7L LOC107984876 HBM HS3ST6 SNORA10 GFER MSRB1 NDUFB10 DECR2 ATP6V0C UBE2I LMF1 RPUSD1 SOX8 ECI1 NTN3 LINC00254 RPL23AP5 NHLRC4 LOC105371046 POLR3K E4F1 TSR3 MIR1225 HAGH SLC9A3R2 STUB1 CHTF18 LOC652276 TRAF7 MIR6859-4 CCNF C16orf91 PKD1 CACNA1H RPL3L TPSAB1 PRSS27 MIR3178 FAHD1 NARFL UNKL NME4 ABCA17P HBA2 MIR5587 RHOT2 RAB26 PIGQ CCDC154 ZNF598 CCDC78 C1QTNF8 DDX11L10 CAPN15 SSTR5-AS1 SSTR5 NME3 TPSB2 RAB11FIP3 CASKIN1 LOC105371184 NPRL3 C16orf59 EME2 MIR3180-5 ABCA3 MPG TBL3 RNPS1 ERVK13-1 NUBP2 SNORA64 MEIOB PRR25 PRR35 TBC1D24 LINC00235 METRN BAIAP3 MSLN HAGHL MIR3177 CRAMP1 SPSB3 MIR6511B1 CEMP1 AMDHD2 KCTD5 TSC2 METTL26 MCRIP2 MIR3176 MIR6768 HBA1 TELO2 WASIR2 TPSG1 MIR4516 LOC107987233 FAM173A RNF151 AXIN1 TMEM204 ARHGDIG FAM234A IGFALS PDPK1 WFIKKN1 IFT140 MLST8 GNG13 NOXO1 MIR3677 PGP FBXL16 JMJD8 LMF1-AS1 LOC105371038
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss PKD1 DNASE1L2 SNHG19 SNORD60 MIR6511B1 SYNGR3 GFER TSC2 RAB26 ZNF598 NPW ECI1 MIR4516 CASKIN1 E4F1 NTHL1 LOC105371049 MIR1225 SLC9A3R2 MIR3180-5 TRAF7 MLST8 TBL3 RNPS1 NOXO1 PGP BRICD5
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss PKD1 DNASE1L2 SNHG19 SNORD60 ECI1 MIR4516 MIR6511B1 CASKIN1 E4F1 LOC105371049 MIR1225 MIR3180-5 TRAF7 MLST8 TSC2 PGP RAB26 BRICD5
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss DNASE1L2 SNHG19 SNORD60 ECI1 CASKIN1 E4F1 TRAF7 MLST8 LOC106660606 RNPS1 MIR3677 PGP MIR940 RAB26 BRICD5
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss PKD1 LOC105371049 MIR1225 MIR3180-5 SNHG19 SNORD60 TRAF7 MIR4516 TSC2 MIR6511B1 CASKIN1 RAB26
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain PKD1 TBC1D24 DNASE1L2 SNHG19 SNORD60 MIR3178 MIR6511B1 MIR6767 CEMP1 AMDHD2 ABCA17P LOC106660606 TSC2 ATP6V0C MIR940 RAB26 MIR6768 ECI1 MIR4516 NTN3 CASKIN1 E4F1 PDPK1 MIR4717 LOC105371049 MIR1225 C16orf59 MIR3180-5 LOC652276 ABCA3 TRAF7 MLST8 RNPS1 MIR3677 PGP BRICD5 CCNF LOC729652
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss DNASE1L2 TRAF7 ECI1 MLST8 LOC106660606 RNPS1 MIR3677 PGP CASKIN1 MIR940 BRICD5 E4F1
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion DNASE1L2 SNHG19 SNORD60 ECI1 CASKIN1 E4F1 MIR4717 ABCA3 TRAF7 MLST8 LOC106660606 RNPS1 MIR3677 PGP MIR940 RAB26 BRICD5

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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