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See other RPUSD1 CNV Assays ›
Gene Symbol
RPUSD1
Assay Reference Genome
Location

Chr.16:786267 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00497788_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 113000

Gene Name:

 RNA pseudouridylate synthase domain containing 1

Gene Aliases:

 C16orf40, RLUCL

Location:

 Chr.16:784974-788383 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RPUSD1 NM_001324086.1 6 766 NP_001311015.1
NM_001324410.1 6 667 NP_001311339.1
NM_001324411.1 5 654 NP_001311340.1
NM_001324412.1 5 568 NP_001311341.1
NM_001324413.1 6 658 NP_001311342.1
NM_001324414.1 6 714 NP_001311343.1
NM_001324415.1 6 767 NP_001311344.1
NM_058192.2 6 757 NP_478072.1
AL514840.3 6 617
AL520203.3 5 596
BC011783.2 5 622 AAH11783.1
BC012951.2 2 257 AAH12951.2
BG686882.1 6 756
BX358716.2 5 553
CX786721.1 6 717

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4828n54 Chr.16:760143 - 828324 on Build GRCh38 Gain PRR25 MIR662 GNG13 MSLN CHTF18 RPUSD1
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain PRR25 MIR662 GNG13 MSLN CHTF18 RPUSD1
nsv817712 Chr.16:774098 - 810673 on Build GRCh38 Loss PRR25 GNG13 CHTF18 RPUSD1
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication IGFALS TELO2 NDUFB10 SLC9A3R2 RPL3L SNORA64 SPSB3 MLST8 PDIA2 METRN NOXO1 LOC100134368 RAB26 PRR35 ECI1 PIGQ IFT140 TSR3 SSTR5-AS1 FAHD1 HBA2 LOC652276 C16orf59 JMJD8 PRR25 MIR1225 MIR4516 FLJ42627 LMF1 MCRIP2 ABCA3 MPG RGS11 TBL3 LOC105371046 TBC1D24 CASKIN1 AMDHD2 CLCN7 DNASE1L2 CRAMP1 PDPK1 HN1L WFIKKN1 MIR6768 HBZ NTN3 METTL26 RPUSD1 RAB11FIP3 MEIOB C16orf91 MRPS34 LOC107987233 TPSD1 CCDC154 SNORA78 LOC105371184 TRAF7 LINC00254 LOC105371049 NME3 GNPTG DDX11L10 LOC105371045 NTHL1 CACNA1H NARFL LMF1-AS1 SNORD60 GNG13 MIR6511B1 SSTR5 TSC2 RAB40C PRSS29P NPRL3 LOC729652 E4F1 WASIR2 HAGH GFER TMEM8A TMEM204 ARHGDIG HBM LOC105371038 CCNF TPSAB1 HS3ST6 UNKL SNRNP25 WDR24 PGP SNHG19 RPS2 BRICD5 FAM173A ZNF598 MIR3677 MIR6859-4 RNF151 NHLRC4 SYNGR3 PKD1 MIR940 FBXL16 NME4 BAIAP3 LINC00235 MAPK8IP3 CEMP1 ABCA17P MIR3178 TPSB2 CAPN15 LOC106660606 LOC100287175 MIR5587 CHTF18 CCDC78 MIR4717 C1QTNF8 UBE2I HBA1 KCTD5 HAGHL MIR6767 RHOT2 ATP6V0C PTX4 POLR3K LOC107984876 STUB1 TPSG1 LOC101929280 AXIN1 NPW PRSS27 SOX8 WDR90 MSLN ERVK13-1 MRPL28 LOC105371047 HBQ1 DECR2 MIR3177 EME2 SNORA10 FAM234A MIR3176 RHBDF1 SNHG9 NUBP2 MSRB1 RNPS1 LUC7L RHBDL1 MIR662 RPL23AP5 MIR3180-5
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss STUB1 LOC101929280 METTL26 LOC105371038 WDR90 WDR24 MSLN METRN RPUSD1 RAB11FIP3 FAM173A PRR35 PIGQ LOC107987233 LOC105371184 NHLRC4 FBXL16 JMJD8 PRR25 LINC00235 MIR3176 NARFL CAPN15 MCRIP2 GNG13 LOC100287175 MIR5587 CHTF18 CCDC78 RAB40C RHBDL1 MIR662 WFIKKN1 HAGHL RHOT2
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss JMJD8 STUB1 NARFL LOC105371038 WDR90 WDR24 MCRIP2 GNG13 LOC100287175 MSLN CHTF18 METRN RPUSD1 CCDC78 FAM173A RHBDL1 MIR662 LOC105371184 HAGHL RHOT2 FBXL16
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss STUB1 LOC101929280 METTL26 LOC105371038 WDR90 WDR24 MSLN METRN RPUSD1 RAB11FIP3 FAM173A PRR35 PIGQ LOC107987233 LOC105371184 NHLRC4 FBXL16 JMJD8 PRR25 LINC00235 MIR3176 NARFL CAPN15 MCRIP2 GNG13 LOC100287175 MIR5587 CHTF18 CCDC78 RAB40C RHBDL1 MIR662 WFIKKN1 HAGHL RHOT2
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion LOC107984876 STUB1 LOC101929280 METTL26 LOC105371038 SOX8 WDR90 WDR24 MSLN METRN RPUSD1 RAB11FIP3 FAM173A PRR35 PIGQ LOC107987233 LOC105371184 NHLRC4 SSTR5-AS1 FBXL16 JMJD8 PRR25 LINC00235 MIR3176 NARFL LMF1 LMF1-AS1 CAPN15 MCRIP2 GNG13 LOC100287175 MIR5587 CHTF18 CCDC78 SSTR5 RAB40C C1QTNF8 RHBDL1 MIR662 WFIKKN1 HAGHL RHOT2
nsv571042 Chr.16:785298 - 847566 on Build GRCh38 Loss PRR25 GNG13 CHTF18 RPUSD1
nsv457312 Chr.16:760039 - 797743 on Build GRCh38 Loss MIR662 MSLN CHTF18 RPUSD1
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication STUB1 LOC101929280 METTL26 LOC105371038 WDR90 WDR24 MSLN METRN RPUSD1 FAM173A PIGQ LOC105371184 FBXL16 JMJD8 NARFL MCRIP2 GNG13 LOC100287175 CHTF18 CCDC78 RAB40C RHBDL1 MIR662 WFIKKN1 HAGHL RHOT2
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication STUB1 LOC101929280 METTL26 LOC105371038 WDR90 WDR24 MSLN METRN RPUSD1 RAB11FIP3 FAM173A PRR35 PIGQ LOC107987233 LOC105371184 NHLRC4 FBXL16 JMJD8 PRR25 LINC00235 MIR3176 NARFL CAPN15 MCRIP2 GNG13 LOC100287175 MIR5587 CHTF18 CCDC78 RAB40C RHBDL1 MIR662 WFIKKN1 HAGHL RHOT2

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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