Hs00501592_cn

• Gene Symbol: LOC100506023
• Assay Reference Genome Location: Chr.1:173418093 on build GRCh38
• Cytoband: 1q25.1

Target Gene Details

• Entrez Gene ID: 100506023
• Gene Name: uncharacterized LOC100506023
• Gene Aliases: -
• Location: Chr.1:173235060-173477155 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC100506023	NR_037845.1
	AK127238.1

Target Gene Details

• Entrez Gene ID: 101928673
• Gene Name: uncharacterized LOC101928673
• Gene Aliases: -
• Location: Chr.1:173417789-173461362 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC101928673	NR_125960.1	2	1515
	AA806822.1	1	311
	AK130460.1	2	1516	BAC85357.1
	BU735514.1	1	321

Target Gene Details

• Entrez Gene ID: 7292
• Gene Name: tumor necrosis factor superfamily member 4
• Gene Aliases: CD134L, CD252, GP34, OX-40L, OX4OL, TNLG2B, TXGP1
• Location: Chr.1:173183729-173462208 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TNFSF4	XM_017002229.1			XP_016857718.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv831915	Chr.1:173299285 - 173513018 on Build GRCh38	Gain+Loss	LOC100506023 PRDX6 SLC9C2 TNFSF4 LOC101928673

More Information

Additional Information:

For this assay, SNP(s) [rs73023556] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

defense response to nematode
acute inflammatory response
positive regulation of T cell cytokine production
regulation of adaptive immune response
positive regulation of type 2 immune response
positive regulation of immunoglobulin mediated immune response
immune response
signal transduction
cholesterol metabolic process
positive regulation of cell proliferation
response to virus
negative regulation of interferon-gamma production
negative regulation of interleukin-17 production
positive regulation of interferon-gamma production
positive regulation of interleukin-10 production
positive regulation of interleukin-12 production
positive regulation of interleukin-13 production
positive regulation of interleukin-2 production
positive regulation of interleukin-4 production
positive regulation of interleukin-6 production
tumor necrosis factor-mediated signaling pathway
memory T cell activation
T-helper 2 cell activation
response to nitrogen dioxide
cellular response to nitrogen dioxide
CD4-positive, alpha-beta T cell costimulation
T cell proliferation
positive regulation of T cell proliferation
positive regulation of activated T cell proliferation
positive regulation of CD4-positive, alpha-beta T cell differentiation
positive regulation of memory T cell differentiation
negative regulation of sequence-specific DNA binding transcription factor activity
negative regulation of regulatory T cell differentiation
negative regulation of T-helper 1 cell differentiation
positive regulation of T-helper 2 cell differentiation
negative regulation of transcription, DNA-templated
positive regulation of alpha-beta T cell proliferation
negative regulation of cytokine secretion
regulation of inflammatory response
positive regulation of inflammatory response
positive regulation of B cell activation
positive regulation of immunoglobulin secretion
cellular response to lipopolysaccharide
cellular response to prostaglandin E stimulus
chemokine (C-C motif) ligand 11 production
positive regulation of CD4-positive, alpha-beta T cell costimulation
positive regulation of memory T cell activation
positive regulation of T-helper 2 cell activation
positive regulation of interleukin-4-dependent isotype switching to IgE isotypes

Function(s)

receptor binding
cytokine activity
tumor necrosis factor receptor binding
tumor necrosis factor receptor superfamily binding