Hs00506960_cn

• Gene Symbol: GPR17
• Assay Reference Genome Location: Chr.2:127652004 on build GRCh38
• Cytoband: 2q14.3

Target Gene Details

• Entrez Gene ID: 2840
• Gene Name: G protein-coupled receptor 17
• Gene Aliases: -
• Location: Chr.2:127645864-127652639 on Build GRCh38
• Assay Gene Location: Within Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GPR17	NM_001161415.1	4	1964	NP_001154887.1
	NM_001161416.1	3	1899	NP_001154888.1
	NM_001161417.1	2	1670	NP_001154889.1
	NM_005291.2	3	1735	NP_005282.1
	XM_017003833.1	2	2091	XP_016859322.1
	AK126849.1	1	2925
	BC031653.1	2	1349	AAH31653.1
	BX538082.1			CAD98006.1
	Y12546.1	3	1427	CAA73144.1
	Z94154.1	2	1363	CAB08107.1
	Z94155.1	1	1147	CAB08108.1

Target Gene Details

• Entrez Gene ID: 55679
• Gene Name: LIM zinc finger domain containing 2
• Gene Aliases: LGMD2W, PINCH-2, PINCH2
• Location: Chr.2:127638421-127681786 on Build GRCh38
• Assay Gene Location: Within Intron 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LIMS2	NM_001136037.2			NP_001129509.2
	NM_001161403.1			NP_001154875.1
	NM_001161404.1			NP_001154876.1
	NM_017980.4			NP_060450.2
	XM_005263710.2			XP_005263767.1
	XM_006712627.3			XP_006712690.1
	XM_011511453.1			XP_011509755.1
	AF484961.1			AAM97589.1
	AF520987.1			AAM77350.1
	AF527764.1			AAQ09011.1
	AF527765.1			AAQ09012.1
	AF527766.1			AAQ09013.1
	AF527767.1			AAQ09014.1
	AK000906.1			BAA91419.1
	AK022470.1			BAB14047.1
	AK055363.1
	AK091652.1
	AK094954.1
	AK095790.1
	AK123014.1
	AK297645.1
	BC065816.1			AAH65816.1
	DC356496.1
	DR006887.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv4069n100	Chr.2:127537744 - 127722066 on Build GRCh38	Gain	LOC105373609 GPR17 SFT2D3 LIMS2 WDR33 MYO7B
nsv508864	Chr.2:127585891 - 127684658 on Build GRCh38	Insertion	GPR17 LIMS2 MYO7B
nsv953155	Chr.2:127617926 - 127665326 on Build GRCh38	Deletion	GPR17 LIMS2 MYO7B
nsv470482	Chr.2:127593233 - 127707973 on Build GRCh38	Loss	GPR17 SFT2D3 LIMS2 WDR33 MYO7B
nsv583038	Chr.2:127641265 - 127718910 on Build GRCh38	Loss	GPR17 SFT2D3 LIMS2 WDR33

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

G-protein coupled receptor, cell junction protein

Gene Ontology Categories:

Process(es)

G-protein coupled receptor signaling pathway
chemokine-mediated signaling pathway
single organismal cell-cell adhesion
cell junction assembly
negative regulation of apoptotic process
cell-cell junction organization
negative regulation of neural precursor cell proliferation
negative regulation of hepatocyte proliferation
positive regulation of integrin-mediated signaling pathway

Function(s)

chemokine receptor activity
zinc ion binding