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See other EGFL8 CNV Assays ›
Gene Symbol
EGFL8
Assay Reference Genome
Location

Chr.6:32167943 on build GRCh38
Cytoband
6p21.32
Assay ID Hs00508603_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 80864

Gene Name:

 EGF like domain multiple 8

Gene Aliases:

 C6orf8, NG3

Location:

 Chr.6:32164605-32168285 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 8 - Exon 9
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
EGFL8 NM_030652.3 NP_085155.1
NR_037860.1
AB190520.1 BAD51398.1
AK126457.1
AY358139.1 AAQ88506.1
BC035574.1 AAH35574.1
BC052591.1 AAH52591.1

Target Gene Details

Entrez Gene ID:

 100532746

Gene Name:

 PPT2-EGFL8 readthrough (NMD candidate)

Gene Aliases:

 -

Location:

 Chr.6:32153999-32168285 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 15 - Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PPT2-EGFL8 NR_037861.1
AB209572.1 BAD92809.1
AF020544.1 AAB80731.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss GPSM3 FKBPL AGER MIR6833 TNXB LOC100507547 PBX2 PPT2 AGPAT1 PPT2-EGFL8 MIR6721 ATF6B PRRT1 RNF5 EGFL8 NOTCH4
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss HLA-DQB1 SNORD52 HLA-DRB5 TNXB LOC100507547 HLA-DQB1-AS1 NELFE C4B HLA-DRA SLC44A4 ZBTB12 C4A STK19 NEU1 PPT2 C2 CYP21A2 SKIV2L CYP21A1P CFB NOTCH4 C6orf10 LOC101929163 GPSM3 AGER MIR6833 HLA-DQA1 TNXA PBX2 HLA-DRB6 PPT2-EGFL8 C2-AS1 DXO RNF5 HSPA1B FKBPL HSPA1A HCG23 AGPAT1 MIR1236 EHMT2 C6orf48 BTNL2 HLA-DRB1 SNORD48 MIR6721 ATF6B PRRT1 EGFL8
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss HLA-DQB1 C6orf10 LOC101929163 GPSM3 AGER HLA-DQB2 MIR6833 HLA-DRB5 TNXB HLA-DQA1 LOC100507547 TNXA PBX2 HLA-DQB1-AS1 C4B HLA-DRB6 PPT2-EGFL8 HLA-DRA MIR3135B HLA-DQA2 RNF5 C4A FKBPL HCG23 PPT2 AGPAT1 CYP21A2 BTNL2 HLA-DRB1 MIR6721 ATF6B CYP21A1P PRRT1 EGFL8 NOTCH4
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss GPSM3 AGER MIR6833 TNXB LOC100507547 TNXA PBX2 NELFE C4B PPT2-EGFL8 C2-AS1 DXO RNF5 C4A FKBPL STK19 PPT2 AGPAT1 C2 MIR1236 CYP21A2 SKIV2L MIR6721 ATF6B CYP21A1P PRRT1 CFB EGFL8 NOTCH4
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion ATP6V1G2 NCR3 SAPCD1-AS1 ABHD16A SNORD52 HLA-DRB5 TNXB MIR4646 BAG6 LOC100507547 NELFE C4B SNORA38 MSH5-SAPCD1 HLA-DRA LOC102725068 SNORD84 SLC44A4 ZBTB12 LST1 PRRC2A C6orf47 C4A STK19 GPANK1 APOM HSPA1L LY6G5C LOC100287329 LY6G6C NEU1 PPT2 C2 LTA CYP21A2 SAPCD1 SKIV2L LY6G5B TNF CYP21A1P VWA7 CFB NOTCH4 HCG26 C6orf10 LOC101929163 GPSM3 AGER DDAH2 MIR6833 AIF1 VARS MCCD1 TNXA PBX2 MICB LY6G6E HLA-DRB6 PPT2-EGFL8 CLIC1 HCP5 C2-AS1 DXO RNF5 HSPA1B LY6G6D FKBPL ATP6V1G2-DDX39B HSPA1A C6orf25 LTB NFKBIL1 LY6G6F DDX39B HCG23 DDX39B-AS1 AGPAT1 MSH5 MIR6832 MIR1236 EHMT2 C6orf48 SNORD117 BTNL2 CSNK2B HLA-DRB1 SNORD48 LSM2 MIR6721 ATF6B PRRT1 EGFL8
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion ATP6V1G2 NCR3 HLA-DRB5 HLA-DOB BAG6 HLA-DPB2 HSD17B8 NELFE C4B SNORA38 MSH5-SAPCD1 HLA-DRA TAPBP SNORD84 SLC44A4 LOC100294145 ZBTB12 LST1 WDR46 APOM PSMB9 KIFC1 HSPA1L LY6G5C LOC100287329 MIR6834 NEU1 PPT2 LTA TNF CFB NOTCH4 LOC101929163 MIR6833 PBX2 COL11A2 HCG24 LY6G6E B3GALT4 PPT2-EGFL8 TAP1 MIR3135B HCP5 HLA-DMA HLA-DPA1 RXRB DAXX HSPA1B ZBTB9 FKBPL ATP6V1G2-DDX39B C6orf25 HLA-DOA TAP2 PSMB8-AS1 LTB LY6G6F MIR6832 MIR1236 C6orf48 RGL2 PPP1R2P1 PFDN6 BTNL2 CSNK2B HLA-DRB1 MIR6721 ATF6B PRRT1 HLA-DQB1 SAPCD1-AS1 ABHD16A HLA-DQB2 PHF1 SNORD52 TNXB VPS52 MIR4646 LOC100507547 HLA-DQB1-AS1 LOC102725068 PRRC2A C6orf47 C4A STK19 GPANK1 MIR6873 HLA-DPB1 LY6G6C C2 RING1 PSMB8 CYP21A2 SAPCD1 SKIV2L LY6G5B CYP21A1P HLA-DMB VWA7 HCG26 C6orf10 MIR5004 GPSM3 AGER DDAH2 AIF1 ZBTB22 HLA-DQA1 VARS MCCD1 CUTA TNXA MICB SYNGAP1 HLA-DRB6 CLIC1 BRD2 C2-AS1 DXO RPS18 HLA-DQA2 RNF5 LY6G6D HSPA1A MIR219A1 HCG25 NFKBIL1 DDX39B HCG23 DDX39B-AS1 AGPAT1 MSH5 EHMT2 SNORD117 SNORD48 LSM2 SLC39A7 EGFL8
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss GPSM3 FKBPL AGER MIR6833 TNXB LOC100507547 PBX2 PPT2 AGPAT1 PPT2-EGFL8 MIR6721 ATF6B PRRT1 RNF5 EGFL8 NOTCH4
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion ATP6V1G2 NCR3 HLA-DRB5 HLA-DOB BAG6 HLA-DPB2 HSD17B8 NELFE C4B SNORA38 MSH5-SAPCD1 HLA-DRA TAPBP SNORD84 SLC44A4 LOC100294145 ZBTB12 LST1 WDR46 APOM PSMB9 KIFC1 HSPA1L LY6G5C LOC100287329 MIR6834 NEU1 PPT2 LTA TNF CFB NOTCH4 LOC101929163 MIR6833 PBX2 COL11A2 HCG24 LY6G6E B3GALT4 PPT2-EGFL8 TAP1 MIR3135B HCP5 HLA-DMA HLA-DPA1 RXRB DAXX HSPA1B ZBTB9 FKBPL ATP6V1G2-DDX39B C6orf25 HLA-DOA TAP2 PSMB8-AS1 LTB LY6G6F MIR6832 MIR1236 C6orf48 RGL2 PPP1R2P1 PFDN6 BTNL2 CSNK2B HLA-DRB1 MIR6721 ATF6B PRRT1 HLA-DQB1 SAPCD1-AS1 ABHD16A HLA-DQB2 PHF1 SNORD52 TNXB VPS52 MIR4646 LOC100507547 HLA-DQB1-AS1 LOC102725068 PRRC2A C6orf47 C4A STK19 GPANK1 MIR6873 HLA-DPB1 LY6G6C C2 RING1 PSMB8 CYP21A2 SAPCD1 SKIV2L LY6G5B CYP21A1P HLA-DMB VWA7 HCG26 C6orf10 MIR5004 GPSM3 AGER DDAH2 AIF1 ZBTB22 HLA-DQA1 VARS MCCD1 CUTA TNXA MICB SYNGAP1 HLA-DRB6 CLIC1 BRD2 C2-AS1 DXO RPS18 HLA-DQA2 RNF5 LY6G6D HSPA1A MIR219A1 HCG25 NFKBIL1 DDX39B HCG23 DDX39B-AS1 AGPAT1 MSH5 EHMT2 SNORD117 SNORD48 LSM2 SLC39A7 EGFL8
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss ATP6V1G2 NCR3 SAPCD1-AS1 ABHD16A SNORD52 TNXB MIR4646 BAG6 LOC100507547 NELFE C4B SNORA38 MSH5-SAPCD1 HLA-DRA LOC102725068 SNORD84 SLC44A4 ZBTB12 LST1 PRRC2A C6orf47 C4A STK19 GPANK1 APOM HSPA1L LY6G5C LOC100287329 LY6G6C NEU1 PPT2 C2 MIR6891 LTA CYP21A2 SAPCD1 SKIV2L LY6G5B TNF CYP21A1P VWA7 CFB NOTCH4 HCG26 C6orf10 LOC101929163 GPSM3 AGER DDAH2 MIR6833 AIF1 VARS MCCD1 TNXA PBX2 MICB LY6G6E PPT2-EGFL8 CLIC1 HCP5 C2-AS1 DXO RNF5 MICA HSPA1B LY6G6D FKBPL ATP6V1G2-DDX39B HSPA1A C6orf25 LTB HLA-B NFKBIL1 LY6G6F DDX39B HCG23 DDX39B-AS1 AGPAT1 MSH5 MIR6832 MIR1236 EHMT2 C6orf48 SNORD117 BTNL2 CSNK2B SNORD48 LSM2 MIR6721 ATF6B PRRT1 EGFL8

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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