Hs00517583_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137035323 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2	3	2356	NP_997394.1
	XM_017014717.1	3	1321	XP_016870206.1
	AK093587.1	2	725	BAC04202.1
	AK124899.1	3	2356	BAC85986.1
	BC132809.1
	BC136839.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	MIR3621 C9orf139 CLIC3 NPDC1 LOC101930307 ABCA2 FUT7 ENTPD2 C9orf142 MAN1B1 MAN1B1-AS1 PRR31 SAPCD2 UAP1L1 GRIN1 LCNL1 DPP7 LRRC26 TMEM210 PTGDS
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	C9orf139 EDF1 NSMF LOC101930307 MIR7114 ENTPD2 RABL6 TUBB4B PHPT1 TRAF2 C8G TPRN MAMDC4 DPP7 TOR4A PNPLA7 SSNA1 CYSRT1 LRRC26 PTGDS EXD3 LCN12 STPG3 MAN1B1-AS1 SAPCD2 UAP1L1 GRIN1 RNF224 C9orf173-AS1 MIR4479 LCNL1 NDOR1 MIR3621 NELFB ABCA2 FUT7 FBXW5 C9orf142 C9orf172 SLC34A3 TMEM203 TMEM210 NRARP CLIC3 ANAPC2 CCDC183-AS1 NPDC1 FAM166A MAN1B1 PRR31 MIR4292 ENTPD8 CCDC183 RNF208 NOXA1
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	C9orf139 CLIC3 LCN12 NPDC1 LOC101930307 ABCA2 FUT7 ENTPD2 C9orf142 MAN1B1 MAN1B1-AS1 PRR31 SAPCD2 UAP1L1 C8G LCNL1 DPP7 PTGDS
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	SNHG7 C9orf139 EDF1 SDCCAG3 PMPCA MIR126 LOC101930307 ENTPD2 RABL6 LINC01451 MIR6722 PHPT1 FAM69B TRAF2 C8G MAMDC4 DPP7 C9orf163 AGPAT2 LRRC26 PTGDS LCN12 SNORA17A LOC100128593 MAN1B1-AS1 HSPC324 SAPCD2 UAP1L1 GRIN1 MIR4674 MIR4479 LCNL1 DNLZ MIR4673 SNAPC4 MIR3621 ABCA2 FUT7 NALT1 FBXW5 C9orf142 SNORA17B SEC16A C9orf172 CARD9 TMEM210 TMEM141 CLIC3 CCDC183-AS1 NOTCH1 NPDC1 LCN15 EGFL7 LCN6 MAN1B1 PRR31 MIR4292 LCN8 CCDC183 INPP5E LCN10
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	MIR3621 C9orf139 ANAPC2 NPDC1 LOC101930307 FUT7 ENTPD2 MAN1B1 MAN1B1-AS1 SAPCD2 UAP1L1 GRIN1 DPP7 SSNA1 LRRC26 TMEM210
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	SNHG7 C9orf139 EDF1 MIR126 LOC101930307 ENTPD2 RABL6 LINC01451 TUBB4B MIR6722 PHPT1 FAM69B TRAF2 C8G TPRN MAMDC4 DPP7 TOR4A AGPAT2 SSNA1 CYSRT1 LRRC26 PTGDS EXD3 LCN12 SNORA17A STPG3 LOC100128593 MAN1B1-AS1 HSPC324 SAPCD2 UAP1L1 GRIN1 RNF224 C9orf173-AS1 MIR4479 LCNL1 NDOR1 MIR3621 NELFB ABCA2 FUT7 FBXW5 C9orf142 SNORA17B C9orf172 SLC34A3 TMEM203 TMEM210 TMEM141 NRARP CLIC3 ANAPC2 CCDC183-AS1 NPDC1 LCN15 EGFL7 FAM166A LCN6 MAN1B1 PRR31 MIR4292 LCN8 CCDC183 RNF208 LCN10
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	C9orf139 NPDC1 ABCA2 FUT7 ENTPD2

More Information

• Set Membership: Intragenic, Exonic, DGV Variation