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See other ZGPAT CNV Assays ›
Gene Symbol
ZGPAT
Assay Reference Genome
Location

Chr.20:63734165 on build GRCh38
Cytoband
20q13.33
Assay ID Hs00517584_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 84619

Gene Name:

 zinc finger CCCH-type and G-patch domain containing

Gene Aliases:

 GPATC6, GPATCH6, KIAA1847, ZC3H9, ZC3HDC9, ZIP

Location:

 Chr.20:63707442-63736142 on Build GRCh38

Assay Gene Location:

 Within Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZGPAT NM_001083113.1 NP_001076582.1
NM_001195653.1 NP_001182582.1
NM_001195654.1 NP_001182583.1
NM_032527.4 NP_115916.3
NM_181485.2 NP_852150.2
AB058750.3
AK027878.1 BAB55426.1
AK074961.1 4 1405 BAC11317.1
AK307368.1
AK314726.1
BC019338.1 AAH19338.1
BC032612.1 AAH32612.1
KU178806.1
KU178807.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2722959 Chr.20:63715664 - 63806918 on Build GRCh38 Deletion SLC2A4RG ZBTB46 ZGPAT LIME1
nsv953308 Chr.20:63650148 - 63831847 on Build GRCh38 Deletion SLC2A4RG ZBTB46 STMN3 RTEL1 ZGPAT ARFRP1 RTEL1-TNFRSF6B LIME1 ZBTB46-AS1 TNFRSF6B
nsv586614 Chr.20:63725275 - 63741460 on Build GRCh38 Gain SLC2A4RG ZGPAT LIME1
nsv1139762 Chr.20:63731048 - 63737647 on Build GRCh38 Duplication ZGPAT LIME1
nsv1160690 Chr.20:63639552 - 63744287 on Build GRCh38 Deletion SLC2A4RG ZBTB46 STMN3 RTEL1 ZGPAT ARFRP1 RTEL1-TNFRSF6B LIME1 TNFRSF6B
nsv428381 Chr.20:63583375 - 64334167 on Build GRCh38 Gain+Loss MIR941-3 C20orf181 MYT1 MIR6813 MIR1914 TCEA2 PCMTD2 LINC00266-1 NPBWR2 LIME1 TNFRSF6B MIR941-1 SAMD10 RGS19 GMEB2 MIR941-5 ABHD16B LKAAEAR1 ZBTB46-AS1 SOX18 SLC2A4RG ZBTB46 UCKL1-AS1 OPRL1 ZGPAT ARFRP1 MIR941-4 UCKL1 MIR647 LOC100505771 PRPF6 STMN3 LINC00176 RTEL1 DNAJC5 RTEL1-TNFRSF6B MIR941-2 ZNF512B TPD52L2
esv7227 Chr.20:63715550 - 63807161 on Build GRCh38 Loss SLC2A4RG ZBTB46 ZGPAT LIME1
nsv1059142 Chr.20:63731978 - 63798885 on Build GRCh38 Gain SLC2A4RG ZBTB46 ZGPAT LIME1
nsv470563 Chr.20:63486715 - 63793308 on Build GRCh38 Loss SRMS SLC2A4RG ZBTB46 PPDPF ZGPAT ARFRP1 FNDC11 HELZ2 LIME1 LOC100505771 PTK6 TNFRSF6B STMN3 RTEL1 GMEB2 RTEL1-TNFRSF6B EEF1A2
esv2758806 Chr.20:63470996 - 63745014 on Build GRCh38 Gain+Loss SRMS SLC2A4RG ZBTB46 PPDPF ZGPAT ARFRP1 FNDC11 HELZ2 LIME1 LOC100505771 PTK6 TNFRSF6B STMN3 KCNQ2 RTEL1 GMEB2 RTEL1-TNFRSF6B EEF1A2

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