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See other MSH5-SAPCD1 CNV Assays ›
Gene Symbol
MSH5-SAPCD1
Assay Reference Genome
Location

Chr.6:31764828 on build GRCh38
Cytoband
6p21.33
Assay ID Hs00525780_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 100532732

Gene Name:

 MSH5-SAPCD1 readthrough (NMD candidate)

Gene Aliases:

 MSH5-C6orf26

Location:

 Chr.6:31739948-31764850 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 29
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MSH5-SAPCD1 NR_037846.1
AJ245661.1 CAB52406.1
AL122094.1 CAB59262.1

Target Gene Details

Entrez Gene ID:

 401251

Gene Name:

 suppressor APC domain containing 1

Gene Aliases:

 C6orf26, NG23

Location:

 Chr.6:31762996-31764850 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAPCD1 NM_001039651.1 NP_001034740.1
AI765046.1

Target Gene Details

Entrez Gene ID:

 104413891

Gene Name:

 SAPCD1 antisense RNA 1

Gene Aliases:

 C6orf26-AS1

Location:

 Chr.6:31764135-31765588 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAPCD1-AS1 NR_126423.1
BM509003.1
BU680278.1

Target Gene Details

Entrez Gene ID:

 80737

Gene Name:

 von Willebrand factor A domain containing 7

Gene Aliases:

 C6orf27, G7c, NG37

Location:

 Chr.6:31764135-31777331 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
VWA7 XM_005249427.2 16 3758 XP_005249484.1
XM_017011327.1 15 3793 XP_016866816.1
XM_017011328.1 16 3904 XP_016866817.1
XM_017011329.1 14 3302 XP_016866818.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion PRRT1 MICB SNORD52 MIR6832 LOC102725068 MCCD1 C2-AS1 CYP21A1P C6orf10 AIF1 C6orf47 VARS LY6G5C LY6G6E TNXB SNORA38 DXO STK19 SNORD48 SAPCD1 PPT2-EGFL8 LOC100507547 LOC100287329 PRRC2A AGER LY6G6D HLA-DRB5 LY6G5B SNORD84 PPT2 CFB EHMT2 ATF6B LSM2 HCG23 HCG26 SNORD117 BTNL2 HLA-DRA EGFL8 PBX2 TNF GPANK1 LTA HSPA1L NCR3 HLA-DRB1 C4A DDAH2 SAPCD1-AS1 MSH5 TNXA LY6G6C VWA7 HLA-DRB6 FKBPL BAG6 LTB AGPAT1 ATP6V1G2-DDX39B MIR4646 C6orf48 HSPA1A C6orf25 LOC101929163 DDX39B-AS1 MIR6833 NFKBIL1 HSPA1B NELFE ZBTB12 CYP21A2 MIR1236 RNF5 DDX39B HCP5 NOTCH4 SLC44A4 C4B LST1 ATP6V1G2 NEU1 CLIC1 SKIV2L CSNK2B MSH5-SAPCD1 ABHD16A APOM GPSM3 MIR6721 C2 LY6G6F
esv2763547 Chr.6:31748105 - 31770701 on Build GRCh38 Loss SAPCD1-AS1 SAPCD1 MSH5 MSH5-SAPCD1 VWA7
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss MIR6891 MICB SNORD52 MIR6832 LOC102725068 MCCD1 C2-AS1 CYP21A1P AIF1 C6orf47 VARS LY6G5C HLA-B LY6G6E TNXB SNORA38 DXO STK19 SNORD48 SAPCD1 LOC100287329 PRRC2A LY6G6D LY6G5B SNORD84 CFB EHMT2 LSM2 HCG26 SNORD117 TNF GPANK1 LTA HSPA1L NCR3 MICA C4A DDAH2 SAPCD1-AS1 MSH5 TNXA LY6G6C VWA7 BAG6 LTB ATP6V1G2-DDX39B MIR4646 C6orf48 HSPA1A C6orf25 DDX39B-AS1 NFKBIL1 HSPA1B NELFE ZBTB12 CYP21A2 MIR1236 DDX39B HCP5 SLC44A4 C4B LST1 ATP6V1G2 NEU1 CLIC1 SKIV2L CSNK2B MSH5-SAPCD1 ABHD16A APOM C2 LY6G6F
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion MIR6832 LOC102725068 MCCD1 HLA-DQB2 C2-AS1 VARS LY6G5C HLA-DOA SNORA38 HLA-DMB HSD17B8 DXO SNORD48 SAPCD1 LOC100507547 HCG25 HLA-DRB5 EHMT2 ATF6B LSM2 HCG23 HCG26 B3GALT4 RGL2 BTNL2 EGFL8 PBX2 RING1 TAP1 TNF PHF1 GPANK1 RXRB HLA-DRB1 C4A DDAH2 TNXA LY6G6C HLA-DRB6 DAXX BAG6 PPP1R2P1 WDR46 C6orf25 DDX39B-AS1 HLA-DQA1 MIR6833 HSPA1B ZBTB12 MIR1236 HLA-DMA HLA-DQB1 RNF5 DDX39B MIR6873 NOTCH4 SLC44A4 LST1 NEU1 SKIV2L MSH5-SAPCD1 ABHD16A PFDN6 APOM C2 PRRT1 KIFC1 MICB SNORD52 CYP21A1P SYNGAP1 C6orf10 AIF1 C6orf47 LY6G6E TNXB PSMB8 HLA-DPB1 STK19 TAPBP PPT2-EGFL8 HCG24 LOC100287329 PRRC2A AGER PSMB9 LY6G6D LY6G5B SNORD84 PPT2 SLC39A7 HLA-DQB1-AS1 CFB HLA-DOB VPS52 TAP2 RPS18 SNORD117 MIR6834 HLA-DRA PSMB8-AS1 LTA HSPA1L NCR3 LOC100294145 COL11A2 BRD2 MIR5004 SAPCD1-AS1 MIR3135B ZBTB22 MSH5 ZBTB9 VWA7 MIR219A1 HLA-DPB2 FKBPL LTB HLA-DQA2 AGPAT1 ATP6V1G2-DDX39B MIR4646 C6orf48 HSPA1A LOC101929163 NFKBIL1 NELFE CYP21A2 HCP5 HLA-DPA1 C4B ATP6V1G2 CLIC1 CSNK2B CUTA GPSM3 MIR6721 LY6G6F
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion MIR6832 LOC102725068 MCCD1 HLA-DQB2 C2-AS1 VARS LY6G5C HLA-DOA SNORA38 HLA-DMB HSD17B8 DXO SNORD48 SAPCD1 LOC100507547 HCG25 HLA-DRB5 EHMT2 ATF6B LSM2 HCG23 HCG26 B3GALT4 RGL2 BTNL2 EGFL8 PBX2 RING1 TAP1 TNF PHF1 GPANK1 RXRB HLA-DRB1 C4A DDAH2 TNXA LY6G6C HLA-DRB6 DAXX BAG6 PPP1R2P1 WDR46 C6orf25 DDX39B-AS1 HLA-DQA1 MIR6833 HSPA1B ZBTB12 MIR1236 HLA-DMA HLA-DQB1 RNF5 DDX39B MIR6873 NOTCH4 SLC44A4 LST1 NEU1 SKIV2L MSH5-SAPCD1 ABHD16A PFDN6 APOM C2 PRRT1 KIFC1 MICB SNORD52 CYP21A1P SYNGAP1 C6orf10 AIF1 C6orf47 LY6G6E TNXB PSMB8 HLA-DPB1 STK19 TAPBP PPT2-EGFL8 HCG24 LOC100287329 PRRC2A AGER PSMB9 LY6G6D LY6G5B SNORD84 PPT2 SLC39A7 HLA-DQB1-AS1 CFB HLA-DOB VPS52 TAP2 RPS18 SNORD117 MIR6834 HLA-DRA PSMB8-AS1 LTA HSPA1L NCR3 LOC100294145 COL11A2 BRD2 MIR5004 SAPCD1-AS1 MIR3135B ZBTB22 MSH5 ZBTB9 VWA7 MIR219A1 HLA-DPB2 FKBPL LTB HLA-DQA2 AGPAT1 ATP6V1G2-DDX39B MIR4646 C6orf48 HSPA1A LOC101929163 NFKBIL1 NELFE CYP21A2 HCP5 HLA-DPA1 C4B ATP6V1G2 CLIC1 CSNK2B CUTA GPSM3 MIR6721 LY6G6F
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss PRRT1 MIR6891 MICB SNORD52 MIR6832 LOC102725068 MCCD1 C2-AS1 CYP21A1P C6orf10 AIF1 C6orf47 VARS LY6G5C HLA-B LY6G6E TNXB SNORA38 DXO STK19 SNORD48 SAPCD1 PPT2-EGFL8 LOC100507547 LOC100287329 PRRC2A AGER LY6G6D LY6G5B SNORD84 PPT2 CFB EHMT2 ATF6B LSM2 HCG23 HCG26 SNORD117 BTNL2 HLA-DRA EGFL8 PBX2 TNF GPANK1 LTA HSPA1L NCR3 MICA C4A DDAH2 SAPCD1-AS1 MSH5 TNXA LY6G6C VWA7 FKBPL BAG6 LTB AGPAT1 ATP6V1G2-DDX39B MIR4646 C6orf48 HSPA1A C6orf25 LOC101929163 DDX39B-AS1 MIR6833 NFKBIL1 HSPA1B NELFE ZBTB12 CYP21A2 MIR1236 RNF5 DDX39B HCP5 NOTCH4 SLC44A4 C4B LST1 ATP6V1G2 NEU1 CLIC1 SKIV2L CSNK2B MSH5-SAPCD1 ABHD16A APOM GPSM3 MIR6721 C2 LY6G6F

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More Information


Set Membership:

 Intragenic Exonic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

DNA metabolism protein

Gene Ontology Categories:

Function(s) Process(es)


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