Hs00528576_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137033161 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2	2	1612	NP_997394.1
	XM_017014717.1	2	577	XP_016870206.1
	AK093587.1			BAC04202.1
	AK124899.1	2	1612	BAC85986.1
	BC132809.1	1	386
	BC136839.1	1	386

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	LCNL1 FUT7 PRR31 LRRC26 ENTPD2 MAN1B1-AS1 C9orf142 TMEM210 C9orf139 UAP1L1 SAPCD2 PTGDS LOC101930307 CLIC3 MIR3621 ABCA2 MAN1B1 GRIN1 NPDC1 DPP7
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	FUT7 NDOR1 NELFB LRRC26 MAN1B1-AS1 C9orf142 EXD3 CYSRT1 MIR3621 ABCA2 SSNA1 MIR4292 PHPT1 MIR7114 C8G SLC34A3 CLIC3 STPG3 CCDC183-AS1 GRIN1 NPDC1 RABL6 PRR31 TOR4A C9orf172 NOXA1 C9orf139 UAP1L1 RNF208 EDF1 SAPCD2 MAMDC4 TRAF2 TUBB4B TPRN FBXW5 PNPLA7 NRARP LCN12 LCNL1 NSMF ANAPC2 FAM166A ENTPD2 C9orf173-AS1 ENTPD8 TMEM210 PTGDS CCDC183 LOC101930307 RNF224 MIR4479 TMEM203 MAN1B1 DPP7
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	LCNL1 FUT7 PRR31 C8G ENTPD2 MAN1B1-AS1 C9orf142 C9orf139 UAP1L1 SAPCD2 PTGDS LOC101930307 CLIC3 LCN12 ABCA2 MAN1B1 NPDC1 DPP7
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	FUT7 LRRC26 MAN1B1-AS1 C9orf142 SDCCAG3 MIR3621 ABCA2 PMPCA FAM69B INPP5E SNORA17B LOC100128593 MIR4292 EGFL7 AGPAT2 PHPT1 C8G C9orf163 LCN6 CLIC3 CCDC183-AS1 GRIN1 NPDC1 RABL6 LCN10 PRR31 NOTCH1 LCN8 DNLZ C9orf172 SNORA17A C9orf139 UAP1L1 EDF1 SAPCD2 MAMDC4 TRAF2 MIR4673 SNAPC4 FBXW5 MIR6722 MIR126 NALT1 LCN12 HSPC324 LCNL1 LINC01451 SNHG7 ENTPD2 SEC16A TMEM210 LCN15 PTGDS CCDC183 LOC101930307 MIR4479 MAN1B1 CARD9 MIR4674 DPP7 TMEM141
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	SSNA1 FUT7 ANAPC2 LRRC26 ENTPD2 MAN1B1-AS1 TMEM210 C9orf139 UAP1L1 SAPCD2 LOC101930307 MIR3621 MAN1B1 GRIN1 NPDC1 DPP7
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	FUT7 NDOR1 NELFB LRRC26 MAN1B1-AS1 C9orf142 EXD3 CYSRT1 MIR3621 ABCA2 FAM69B SNORA17B LOC100128593 SSNA1 MIR4292 EGFL7 AGPAT2 PHPT1 C8G SLC34A3 LCN6 CLIC3 STPG3 CCDC183-AS1 GRIN1 NPDC1 RABL6 LCN10 PRR31 TOR4A LCN8 C9orf172 SNORA17A C9orf139 UAP1L1 RNF208 EDF1 SAPCD2 MAMDC4 TRAF2 TUBB4B TPRN FBXW5 MIR6722 MIR126 NRARP LCN12 HSPC324 LCNL1 LINC01451 SNHG7 ANAPC2 FAM166A ENTPD2 C9orf173-AS1 TMEM210 LCN15 PTGDS CCDC183 LOC101930307 RNF224 MIR4479 TMEM203 MAN1B1 DPP7 TMEM141
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	FUT7 ABCA2 ENTPD2 NPDC1 C9orf139

More Information

• Set Membership: Intragenic, Exonic, DGV Variation