Name: [Hs00530026_cn] [PCDHA1]
Creator: Thermo Fisher Scientific
Keywords: [PCDHA1] Assay, [protocadherin alpha 1] Assay

Assay Details

Target Gene Details

Entrez Gene ID:	56147
Gene Name:	protocadherin alpha 1
Gene Aliases:	PCDH-ALPHA1
Location:	Chr.5:140786136-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Protein ID
PCDHA1	NM_018900.3	NP_061723.1
	NM_031411.2	NP_113599.1
	AF152305.1	AAD43699.1
	AF169695.1	AAF89692.1

Target Gene Details

Entrez Gene ID:	56139
Gene Name:	protocadherin alpha 10
Gene Aliases:	CNR8, CNRN8, CNRS8, CRNR8, PCDH-ALPHA10
Location:	Chr.5:140855883-141012344 on Build GRCh38
Assay Gene Location:	Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA10	NM_018901.3	1	742	NP_061724.1
	NM_031859.2	1	742	NP_114065.1
	NM_031860.2	1	742	NP_114066.1
	AF152306.1	1	576	AAD43700.1
	AF152475.1	1	576	AAD43736.1
	AF169689.1	1	576	AAF89329.1
	BC130447.1	1	615

Target Gene Details

Entrez Gene ID:	56146
Gene Name:	protocadherin alpha 2
Gene Aliases:	PCDH-ALPHA2
Location:	Chr.5:140794859-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
PCDHA2	AF152310.1			AAD43704.1

Target Gene Details

Entrez Gene ID:	56145
Gene Name:	protocadherin alpha 3
Gene Aliases:	PCDH-ALPHA3
Location:	Chr.5:140801198-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
PCDHA3	AF152311.1			AAD43705.1

Target Gene Details

Entrez Gene ID:	56144
Gene Name:	protocadherin alpha 4
Gene Aliases:	CNR1, CNRN1, CRNR1, PCDH-ALPHA4
Location:	Chr.5:140807074-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Protein ID
PCDHA4	NM_018907.3	NP_061730.1
	AB208925.1	BAD92162.1
	AF152312.1	AAD43706.1

Target Gene Details

Entrez Gene ID:	56143
Gene Name:	protocadherin alpha 5
Gene Aliases:	CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
Location:	Chr.5:140821776-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Protein ID
PCDHA5	NM_018908.2	NP_061731.1
	AB208863.1	BAD92100.1
	AF152313.1	AAD43707.1
	BC033735.1	AAH33735.1

Target Gene Details

Entrez Gene ID:	56142
Gene Name:	protocadherin alpha 6
Gene Aliases:	CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
Location:	Chr.5:140827922-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Protein ID
PCDHA6	NM_018909.3	NP_061732.1
	NM_031849.2	NP_114037.1
	AB209205.1	BAD92442.1
	AF152314.1	AAD43708.1
	AF169694.1	AAF89691.1
	BC036674.2	AAH36674.1

Target Gene Details

Entrez Gene ID:	56141
Gene Name:	protocadherin alpha 7
Gene Aliases:	CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
Location:	Chr.5:140834384-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
PCDHA7	AF152315.1			AAD43709.1

Target Gene Details

Entrez Gene ID:	56140
Gene Name:	protocadherin alpha 8
Gene Aliases:	PCDH-ALPHA8
Location:	Chr.5:140841322-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
PCDHA8	AF152316.1			AAD43710.1

Target Gene Details

Entrez Gene ID:	9752
Gene Name:	protocadherin alpha 9
Gene Aliases:	PCDH-ALPHA9
Location:	Chr.5:140847772-141012344 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Protein ID
PCDHA9	NM_031857.1	NP_114063.1
	AF152317.1	AAD43711.1
	AJ007610.1	CAC22257.1
	AK314303.1
	BC104802.1	AAI04803.1
	BC104804.1	AAI04805.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
dgv10102n54	Chr.5:140851652 - 140857963 on Build GRCh38	Loss	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB14 PCDHGB3 PCDHB15 PCDHB16 PCDHB11 PCDHGB1 PCDHGA11 PCDHGB6 SLC25A2 PCDHB1 PCDHGB2 PCDHGA1 LOC101926905 PCDHGA12 TAF7 PCDHA5 PCDHGA10 PCDHB2 PCDHGA6 PCDHGA4 PCDHB4 PCDHA2 PCDHB19P PCDHGA9 PCDHGA7 PCDHGA8 PCDHA8 PCDHGB4 PCDHGB5 PCDHB10 PCDHB7 PCDHB13 PCDHB6 PCDHB3 PCDHA4 PCDHA11 PCDHB5 PCDHAC1 PCDHGA2 PCDHA9 PCDHGB7 PCDHAC2 PCDHA7 PCDHB9 PCDHA12 PCDHA6 PCDHGA3 PCDHB17P PCDHA13 PCDHB18P PCDHGB8P PCDHB8 PCDHA10 PCDHA1 PCDHB12 PCDHGA5 PCDHA3
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA11 PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
dgv1653e212	Chr.5:140839141 - 140874132 on Build GRCh38	Loss	PCDHA11 PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
nsv599894	Chr.5:140852761 - 140864165 on Build GRCh38	Loss	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
nsv442962	Chr.5:140844251 - 140864171 on Build GRCh38	Loss	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
dgv971n67	Chr.5:140842564 - 140859431 on Build GRCh38	Loss	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
dgv10104n54	Chr.5:140853365 - 140856743 on Build GRCh38	Loss	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
nsv599902	Chr.5:140855278 - 140856743 on Build GRCh38	Loss	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA11 VTRNA1-2 PCDHA6 PCDHA5 HARS PCDHA9 VTRNA1-1 VTRNA1-3 ZMAT2 PCDHA2 PCDHA10 PCDHA1 PCDHA7 PCDHA8 HARS2 PCDHA4 PCDHA3
dgv10097n54	Chr.5:140849850 - 140856743 on Build GRCh38	Loss	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
dgv10094n54	Chr.5:140846323 - 140860465 on Build GRCh38	Loss	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
dgv10099n54	Chr.5:140850785 - 140859109 on Build GRCh38	Loss	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1
nsv964954	Chr.5:140856140 - 140858351 on Build GRCh38	Duplication	PCDHA7 PCDHA6 PCDHA5 PCDHA9 PCDHA8 PCDHA2 PCDHA10 PCDHA4 PCDHA3 PCDHA1

More Information

Set Membership:

Intragenic

Exonic

Intronic

Non-exonic

DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Function(s) Process(es)

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System Message

Genomic Map

Assay Details

Target Gene Details

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Target Gene Details

Entrez Gene ID:

Gene Name:

Gene Aliases:

Location:

Assay Gene Location:

Target Copy Number Variation Details

DGV Version:

More Information

Set Membership:

Panther Classification:

Molecular Function -

Gene Ontology Categories:

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