Name: [Hs00560935_cn] [PHF1]
Creator: Thermo Fisher Scientific
Keywords: [PHF1] Assay, [PHD finger protein 1] Assay

Genomic Map

LOADING...

×

Back To Top

Assay Details

Target Gene Details

Entrez Gene ID:	5252
Gene Name:	PHD finger protein 1
Gene Aliases:	MTF2L2, PCL1, PHF2, TDRD19C, hPHF1
Location:	Chr.6:33410751-33416453 on Build GRCh38
Assay Gene Location:	Overlaps Intron 9 - Exon 10

Gene Symbol	Transcript Accession	Protein ID
PHF1	NM_002636.4	NP_002627.1
	NM_024165.2	NP_077084.1
	NR_027692.1
	XM_011514662.1	XP_011512964.1
	XM_011514663.1	XP_011512965.1
	XM_011514664.1	XP_011512966.1
	XM_011514665.1	XP_011512967.1
	XM_011514666.1	XP_011512968.1
	XM_011514669.1	XP_011512971.1
	XM_011514670.2	XP_011512972.1
	XM_017010939.1	XP_016866428.1
	AF029678.1	AAC52062.1
	AF052205.1	AAC13273.1
	AK225913.1
	AK295412.1
	AK299162.1
	AK316499.1
	BC008834.2	AAH08834.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv830637	Chr.6:33361588 - 33542927 on Build GRCh38	Loss	SYNGAP1 PHF1 CUTA KIFC1 MIR5004 ZBTB9
nsv830635	Chr.6:33270228 - 33446010 on Build GRCh38	Loss	WDR46 VPS52 TAPBP MIR6873 PHF1 KIFC1 MIR5004 B3GALT4 RPS18 SYNGAP1 PFDN6 ZBTB22 RGL2 DAXX MIR6834 CUTA
nsv1073969	Chr.6:31456422 - 33480523 on Build GRCh38	Deletion	C4B PPP1R2P1 LOC101929163 MIR6873 SNORD48 BTNL2 CYP21A1P HLA-DRA LOC100507547 HSPA1L LY6G6F SNORD117 DDX39B VARS NOTCH4 ZBTB12 GPSM3 APOM LSM2 TAP1 TAP2 LY6G5B HCG26 HCP5 MSH5 NFKBIL1 HLA-DRB5 MIR3135B KIFC1 HLA-DRB6 DDAH2 MICB C6orf10 LST1 EGFL8 MIR6833 PSMB9 HSD17B8 ATP6V1G2-DDX39B ZBTB9 HSPA1B WDR46 HLA-DMA PPT2 SNORD52 ABHD16A LTB FKBPL CYP21A2 COL11A2 SLC44A4 NCR3 SKIV2L ZBTB22 PRRT1 RGL2 LY6G6D MIR4646 HSPA1A STK19 NELFE C6orf48 GPANK1 HLA-DOA VPS52 TAPBP MIR219A1 NEU1 LTA RXRB B3GALT4 HCG23 PRRC2A HCG25 PFDN6 LY6G5C MIR6721 SNORA38 DAXX MIR6834 ATF6B MCCD1 C6orf47 HLA-DQB2 HLA-DQA2 C2-AS1 HLA-DQB1 C4A PHF1 DXO LOC102725068 SNORD84 LOC100287329 HLA-DOB DDX39B-AS1 CSNK2B MIR6832 CLIC1 SAPCD1 PBX2 LY6G6C LOC100294145 HLA-DQA1 BRD2 HLA-DPB1 AGPAT1 SYNGAP1 CFB RNF5 HLA-DQB1-AS1 HLA-DMB HLA-DPA1 HLA-DRB1 TNXA SAPCD1-AS1 VWA7 HCG24 EHMT2 MIR5004 TNXB C2 C6orf25 AIF1 RPS18 PSMB8-AS1 MSH5-SAPCD1 HLA-DPB2 CUTA AGER TNF SLC39A7 LY6G6E PPT2-EGFL8 PSMB8 ATP6V1G2 MIR1236 RING1 BAG6
nsv1112900	Chr.6:31455323 - 33480423 on Build GRCh38	Deletion	C4B PPP1R2P1 LOC101929163 MIR6873 SNORD48 BTNL2 CYP21A1P HLA-DRA LOC100507547 HSPA1L LY6G6F SNORD117 DDX39B VARS NOTCH4 ZBTB12 GPSM3 APOM LSM2 TAP1 TAP2 LY6G5B HCG26 HCP5 MSH5 NFKBIL1 HLA-DRB5 MIR3135B KIFC1 HLA-DRB6 DDAH2 MICB C6orf10 LST1 EGFL8 MIR6833 PSMB9 HSD17B8 ATP6V1G2-DDX39B ZBTB9 HSPA1B WDR46 HLA-DMA PPT2 SNORD52 ABHD16A LTB FKBPL CYP21A2 COL11A2 SLC44A4 NCR3 SKIV2L ZBTB22 PRRT1 RGL2 LY6G6D MIR4646 HSPA1A STK19 NELFE C6orf48 GPANK1 HLA-DOA VPS52 TAPBP MIR219A1 NEU1 LTA RXRB B3GALT4 HCG23 PRRC2A HCG25 PFDN6 LY6G5C MIR6721 SNORA38 DAXX MIR6834 ATF6B MCCD1 C6orf47 HLA-DQB2 HLA-DQA2 C2-AS1 HLA-DQB1 C4A PHF1 DXO LOC102725068 SNORD84 LOC100287329 HLA-DOB DDX39B-AS1 CSNK2B MIR6832 CLIC1 SAPCD1 PBX2 LY6G6C LOC100294145 HLA-DQA1 BRD2 HLA-DPB1 AGPAT1 SYNGAP1 CFB RNF5 HLA-DQB1-AS1 HLA-DMB HLA-DPA1 HLA-DRB1 TNXA SAPCD1-AS1 VWA7 HCG24 EHMT2 MIR5004 TNXB C2 C6orf25 AIF1 RPS18 PSMB8-AS1 MSH5-SAPCD1 HLA-DPB2 CUTA AGER TNF SLC39A7 LY6G6E PPT2-EGFL8 PSMB8 ATP6V1G2 MIR1236 RING1 BAG6
nsv1119076	Chr.6:32595823 - 33480623 on Build GRCh38	Deletion	HLA-DQB2 WDR46 PPP1R2P1 HLA-DMA HLA-DQA2 MIR6873 HLA-DQB1 PHF1 HCG24 MIR5004 COL11A2 HLA-DOB RPS18 ZBTB22 PSMB8-AS1 RGL2 HLA-DPB2 CUTA TAP1 TAP2 HLA-DOA VPS52 TAPBP SLC39A7 MIR219A1 LOC100294145 HLA-DQA1 BRD2 MIR3135B HLA-DPB1 KIFC1 RXRB B3GALT4 PSMB8 SYNGAP1 HCG25 PFDN6 PSMB9 HSD17B8 RING1 DAXX MIR6834 HLA-DQB1-AS1 HLA-DMB HLA-DPA1 ZBTB9