Name: [Hs00560935_cn] [PHF1]
Creator: Thermo Fisher Scientific
Keywords: [PHF1] Assay, [PHD finger protein 1] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	5252
Gene Name:	PHD finger protein 1
Gene Aliases:	MTF2L2, PCL1, PHF2, TDRD19C, hPHF1
Location:	Chr.6:33410751-33416453 on Build GRCh38
Assay Gene Location:	Overlaps Intron 9 - Exon 10

Gene Symbol	Transcript Accession	Protein ID
PHF1	NM_002636.4	NP_002627.1
	NM_024165.2	NP_077084.1
	NR_027692.1
	XM_011514662.1	XP_011512964.1
	XM_011514663.1	XP_011512965.1
	XM_011514664.1	XP_011512966.1
	XM_011514665.1	XP_011512967.1
	XM_011514666.1	XP_011512968.1
	XM_011514669.1	XP_011512971.1
	XM_011514670.2	XP_011512972.1
	XM_017010939.1	XP_016866428.1
	AF029678.1	AAC52062.1
	AF052205.1	AAC13273.1
	AK225913.1
	AK295412.1
	AK299162.1
	AK316499.1
	BC008834.2	AAH08834.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv830637	Chr.6:33361588 - 33542927 on Build GRCh38	Loss	CUTA SYNGAP1 PHF1 MIR5004 ZBTB9 KIFC1
nsv830635	Chr.6:33270228 - 33446010 on Build GRCh38	Loss	PFDN6 RGL2 MIR6873 WDR46 TAPBP ZBTB22 SYNGAP1 B3GALT4 DAXX MIR5004 MIR6834 CUTA PHF1 RPS18 VPS52 KIFC1
nsv1073969	Chr.6:31456422 - 33480523 on Build GRCh38	Deletion	SLC44A4 RGL2 GPSM3 RING1 HSD17B8 BAG6 MIR1236 SNORD48 DXO MIR219A1 C6orf10 HLA-DMB MIR4646 PSMB9 PRRC2A CUTA BRD2 FKBPL HLA-DPB1 TAP2 HSPA1B PPT2 PPP1R2P1 SNORD52 VPS52 PFDN6 PSMB8-AS1 C6orf25 DAXX HLA-DOA HSPA1L LOC100507547 HLA-DRB1 EGFL8 ZBTB12 DDX39B HSPA1A MSH5 TNF LTB COL11A2 SNORD84 C4A AIF1 MIR6721 LY6G5C ATF6B PPT2-EGFL8 BTNL2 ATP6V1G2 LOC102725068 LY6G6C NFKBIL1 WDR46 ZBTB22 LSM2 LY6G6F LOC100287329 MIR6834 APOM SAPCD1 VWA7 HLA-DRB6 MICB NOTCH4 SAPCD1-AS1 HLA-DOB SYNGAP1 LST1 PSMB8 LY6G6E AGPAT1 STK19 HLA-DQB1-AS1 MIR6832 PHF1 HLA-DQA2 HLA-DPA1 CSNK2B SLC39A7 GPANK1 HLA-DQA1 HLA-DQB1 LY6G5B VARS TNXA SNORD117 HCP5 TNXB TAPBP LOC101929163 AGER HLA-DQB2 HLA-DMA LY6G6D PBX2 NELFE HCG26 C6orf48 RPS18 CYP21A2 CFB HLA-DRA DDX39B-AS1 LTA HCG23 HCG24 ABHD16A HCG25 MCCD1 HLA-DPB2 EHMT2 ATP6V1G2-DDX39B MSH5-SAPCD1 SNORA38 ZBTB9 MIR6833 TAP1 C2-AS1 MIR3135B NEU1 C4B PRRT1 C2 MIR6873 CYP21A1P B3GALT4 MIR5004 HLA-DRB5 C6orf47 RXRB CLIC1 DDAH2 LOC100294145 NCR3 SKIV2L KIFC1 RNF5
nsv1112900	Chr.6:31455323 - 33480423 on Build GRCh38	Deletion	SLC44A4 RGL2 GPSM3 RING1 HSD17B8 BAG6 MIR1236 SNORD48 DXO MIR219A1 C6orf10 HLA-DMB MIR4646 PSMB9 PRRC2A CUTA BRD2 FKBPL HLA-DPB1 TAP2 HSPA1B PPT2 PPP1R2P1 SNORD52 VPS52 PFDN6 PSMB8-AS1 C6orf25 DAXX HLA-DOA HSPA1L LOC100507547 HLA-DRB1 EGFL8 ZBTB12 DDX39B HSPA1A MSH5 TNF LTB COL11A2 SNORD84 C4A AIF1 MIR6721 LY6G5C ATF6B PPT2-EGFL8 BTNL2 ATP6V1G2 LOC102725068 LY6G6C NFKBIL1 WDR46 ZBTB22 LSM2 LY6G6F LOC100287329 MIR6834 APOM SAPCD1 VWA7 HLA-DRB6 MICB NOTCH4 SAPCD1-AS1 HLA-DOB SYNGAP1 LST1 PSMB8 LY6G6E AGPAT1 STK19 HLA-DQB1-AS1 MIR6832 PHF1 HLA-DQA2 HLA-DPA1 CSNK2B SLC39A7 GPANK1 HLA-DQA1 HLA-DQB1 LY6G5B VARS TNXA SNORD117 HCP5 TNXB TAPBP LOC101929163 AGER HLA-DQB2 HLA-DMA LY6G6D PBX2 NELFE HCG26 C6orf48 RPS18 CYP21A2 CFB HLA-DRA DDX39B-AS1 LTA HCG23 HCG24 ABHD16A HCG25 MCCD1 HLA-DPB2 EHMT2 ATP6V1G2-DDX39B MSH5-SAPCD1 SNORA38 ZBTB9 MIR6833 TAP1 C2-AS1 MIR3135B NEU1 C4B PRRT1 C2 MIR6873 CYP21A1P B3GALT4 MIR5004 HLA-DRB5 C6orf47 RXRB CLIC1 DDAH2 LOC100294145 NCR3 SKIV2L KIFC1 RNF5
nsv1119076	Chr.6:32595823 - 33480623 on Build GRCh38	Deletion	RGL2 HCG24 RING1 HSD17B8 HLA-DOB SYNGAP1 PSMB8 COL11A2 HCG25 MIR219A1 HLA-DPB2 HLA-DMB PSMB9 HLA-DQB1-AS1 CUTA BRD2 HLA-DPB1 TAP2 PHF1 HLA-DQA2 HLA-DPA1 ZBTB9 PPP1R2P1 TAP1 SLC39A7 HLA-DQA1 MIR3135B VPS52 PFDN6 HLA-DQB1 PSMB8-AS1 MIR6873 WDR46 TAPBP ZBTB22 B3GALT4 DAXX MIR5004 MIR6834 HLA-DOA HLA-DQB2 RXRB HLA-DMA LOC100294145 RPS18 KIFC1