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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2180392 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00572102_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 18 3008 NP_065815.1
AB037727.1 10 2145 BAA92544.1
AF451977.1 18 3074 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication RPL23AP5 MIR3677 LMF1-AS1 FLJ42627 CACNA1H MRPS34 MAPK8IP3 MIR6511B1 SNHG9 IGFALS WFIKKN1 NTN3 C16orf91 NOXO1 HBA1 WDR24 HBZ TSR3 LOC105371049 SNORA10 RHBDF1 SYNGR3 PRR35 MIR6767 MRPL28 SOX8 AMDHD2 TBL3 NME4 TRAF7 METTL26 PKD1 FAM234A PDIA2 METRN LOC105371184 CCDC78 RNF151 DECR2 MSRB1 CEMP1 ERVK13-1 HBM RAB26 UNKL MIR940 LOC100134368 CAPN15 MIR3178 RPUSD1 MIR3177 PIGQ E4F1 PTX4 CCDC154 LOC105371047 LOC101929280 LOC100287175 SNORD60 NDUFB10 TMEM8A TMEM204 TPSG1 LINC00254 GFER RAB40C UBE2I SSTR5 MIR6859-4 EME2 MIR6768 FAM173A FAHD1 MIR3180-5 ATP6V0C ECI1 HBA2 CHTF18 SNRNP25 SNORA78 NHLRC4 LOC729652 MCRIP2 ABCA3 NME3 AXIN1 HS3ST6 NARFL MIR662 NPW JMJD8 ZNF598 RGS11 BAIAP3 MIR3176 PRSS27 SLC9A3R2 SNORA64 ABCA17P TPSD1 RAB11FIP3 LMF1 IFT140 ARHGDIG LINC00235 LOC106660606 C16orf59 LOC652276 TBC1D24 DDX11L10 GNG13 CRAMP1 MIR4516 DNASE1L2 RPL3L CASKIN1 HAGHL TPSAB1 TSC2 NUBP2 LOC105371038 RHOT2 RPS2 MLST8 LOC105371045 CLCN7 BRICD5 PRR25 NPRL3 MEIOB PRSS29P HAGH POLR3K RHBDL1 TPSB2 WASIR2 SNHG19 GNPTG WDR90 LUC7L LOC105371046 TELO2 CCNF MPG PDPK1 MIR4717 MSLN MIR5587 STUB1 LOC107984876 HBQ1 RNPS1 KCTD5 C1QTNF8 FBXL16 SPSB3 SSTR5-AS1 LOC107987233 NTHL1 HN1L PGP MIR1225
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss MIR4516 RAB26 DNASE1L2 CASKIN1 TSC2 NPW ZNF598 MIR6511B1 E4F1 MLST8 BRICD5 SLC9A3R2 SNORD60 NOXO1 SNHG19 GFER LOC105371049 SYNGR3 TBL3 TRAF7 PKD1 MIR3180-5 ECI1 RNPS1 NTHL1 PGP MIR1225
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss MIR4516 LOC105371049 RAB26 DNASE1L2 CASKIN1 TSC2 TRAF7 PKD1 MIR6511B1 MIR3180-5 E4F1 MLST8 ECI1 BRICD5 SNORD60 PGP SNHG19 MIR1225
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss MIR3677 RAB26 DNASE1L2 MIR940 CASKIN1 TRAF7 LOC106660606 E4F1 MLST8 ECI1 BRICD5 RNPS1 SNORD60 PGP SNHG19
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR3180-5 MIR4516 LOC105371049 RAB26 SNORD60 CASKIN1 TSC2 TRAF7 SNHG19 PKD1 MIR1225 MIR6511B1
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain CASKIN1 TRAF7
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss E4F1 MLST8 MIR3677 ECI1 BRICD5 DNASE1L2 RNPS1 MIR940 CASKIN1 PGP TRAF7 LOC106660606
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR4516 MIR3677 RAB26 DNASE1L2 MIR940 CASKIN1 TSC2 MIR3178 MIR6511B1 E4F1 MLST8 BRICD5 NTN3 SNORD60 ABCA17P SNHG19 LOC105371049 MIR6767 AMDHD2 CCNF PDPK1 TRAF7 MIR4717 LOC106660606 PKD1 MIR6768 MIR3180-5 ATP6V0C ECI1 C16orf59 RNPS1 LOC652276 CEMP1 TBC1D24 LOC729652 PGP ABCA3 MIR1225
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MIR3677 RAB26 DNASE1L2 MIR940 CASKIN1 TRAF7 MIR4717 LOC106660606 E4F1 MLST8 ECI1 BRICD5 RNPS1 SNORD60 PGP SNHG19 ABCA3

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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