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See other CPSF3L CNV Assays ›
Gene Symbol
CPSF3L
Assay Reference Genome
Location

Chr.1:1313758 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00594131_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54973

Gene Name:

 cleavage and polyadenylation specific factor 3-like

Gene Aliases:

 CPSF73L, INT11, INTS11, RC-68, RC68

Location:

 Chr.1:1311585-1324687 on Build GRCh38

Assay Gene Location:

 Within Exon 11
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CPSF3L NM_001256456.1 11 1483 NP_001243385.1
NM_001256460.1 10 1117 NP_001243389.1
NM_001256462.1 7 716 NP_001243391.1
NM_001256463.1 7 707 NP_001243392.1
NM_017871.5 9 1010 NP_060341.2
XM_011541647.1 11 1161 XP_011539949.1
XM_011541648.1 11 1165 XP_011539950.1
XM_011541650.1 9 890 XP_011539952.1
XM_017001557.1 10 966 XP_016857046.1
XM_017001558.1 11 1020 XP_016857047.1
AK000549.1 1 154 BAA91246.1
AK021939.1 7 673 BAB13943.1
AK023356.1 9 928 BAB14541.1
AK056652.1 11 1405
AK058018.1 7 682
AK092190.1 6 743
AK123641.1 1 1413
AK291387.1 11 1446
AK297350.1 10 1067
AL136813.1 9 989 CAB66747.1
BC000675.2 6 550 AAH00675.2
BC007978.2 9 972 AAH07978.1
BC008041.2 6 607 AAH08041.1
BC013904.2 5 419 AAH13904.2
BC020199.1 6 607 AAH20199.1
CR533557.1 9 931 CAG38588.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss OR4F16 SCNN1D LOC102724312 VWA1 LOC105378948 LOC729737 MRPL20 OR4F29 DVL1 LOC105378949 CFAP74 MIR1302-2 NOC2L TTLL10 LOC107985729 SDF4 FAAP20 LINC01128 TMEM88B LOC100506504 UBE2J2 ISG15 TTLL10-AS1 ACAP3 MMP23A ATAD3A FAM132A FAM87B LOC107985728 LOC284600 MIR6859-1 LOC105378947 GABRD KLHL17 FAM138A DDX11L1 CPTP PERM1 LOC105378592 GNB1 TNFRSF4 LOC107984841 LOC102725121 NADK LOC100134822 PUSL1 MIR200A LOC105378591 LOC101928626 TNFRSF18 MIR6723 SKI LINC01342 FNDC10 LOC100130417 LOC148413 FAM41C OR4F5 MXRA8 B3GALT6 CALML6 MIB2 MTND2P28 CDK11B ANKRD65 MORN1 MIR6808 SLC35E2 ATAD3C MIR6726 AGRN HES4 MIR6859-2 SSU72 ATAD3B CDK11A LOC100132287 CCNL2 LOC100288175 MTND1P23 LOC100129534 PRKCZ MIR200B LOC100133331 PLEKHN1 AURKAIP1 MIR6727 C1orf159 LINC00115 CPSF3L TMEM52 WASH7P SLC35E2B LOC100288069 RNF223 SAMD11 MIR429 TMEM240 TAS1R3 LOC105378589 MMP23B LOC100287934
nsv544971 Chr.1:1294063 - 1351426 on Build GRCh38 Loss DVL1 ACAP3 MIR6727 TAS1R3 MIR6808 CPSF3L MIR6726 CPTP PUSL1
nsv544969 Chr.1:1290683 - 1374597 on Build GRCh38 Loss DVL1 ACAP3 AURKAIP1 MIR6727 TAS1R3 MIR6808 CPSF3L MIR6726 SCNN1D MXRA8 CPTP PUSL1
dgv7n100 Chr.1:1306835 - 1379057 on Build GRCh38 Loss DVL1 ACAP3 AURKAIP1 MIR6727 TAS1R3 MIR6808 CPSF3L MXRA8 CPTP PUSL1
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss SCNN1D MXRA8 B3GALT6 DVL1 TTLL10 CPTP MIR200B TNFRSF4 SDF4 AURKAIP1 MIR6727 C1orf159 MIR6808 CPSF3L PUSL1 MIR200A UBE2J2 TTLL10-AS1 RNF223 ACAP3 TNFRSF18 MIR429 TAS1R3 FAM132A MIR6726 LINC01342
dgv6n100 Chr.1:1301750 - 1362354 on Build GRCh38 Gain+Loss DVL1 ACAP3 MIR6727 TAS1R3 MIR6808 CPSF3L MXRA8 CPTP PUSL1
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication SCNN1D LOC105378948 B3GALT6 LOC100288175 TTLL10 CPTP MIR200B TNFRSF4 SDF4 MIR6727 C1orf159 CPSF3L PUSL1 MIR200A UBE2J2 TTLL10-AS1 RNF223 ACAP3 TNFRSF18 MIR429 TAS1R3 FAM132A MIR6726 AGRN LINC01342
nsv1160788 Chr.1:1282706 - 1376336 on Build GRCh38 Deletion DVL1 ACAP3 AURKAIP1 MIR6727 TAS1R3 MIR6808 CPSF3L MIR6726 SCNN1D MXRA8 CPTP PUSL1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC100130417 LOC148413 FAM41C SCNN1D LOC102724312 MXRA8 VWA1 LOC105378948 B3GALT6 MRPL20 MIB2 DVL1 CDK11B NOC2L TTLL10 LOC107985729 SDF4 ANKRD65 MIR6808 LINC01128 TMEM88B UBE2J2 ISG15 TTLL10-AS1 ACAP3 SLC35E2 MMP23A ATAD3A FAM132A FAM87B ATAD3C MIR6726 LOC107985728 AGRN HES4 LOC284600 SSU72 ATAD3B CDK11A CCNL2 KLHL17 LOC100288175 CPTP MIR200B PERM1 TNFRSF4 PLEKHN1 NADK AURKAIP1 MIR6727 C1orf159 LINC00115 CPSF3L SLC35E2B PUSL1 MIR200A LOC100288069 RNF223 TNFRSF18 SAMD11 MIR429 TMEM240 TAS1R3 MMP23B LINC01342 FNDC10 LOC100287934
esv3890636 Chr.1:1304555 - 1353203 on Build GRCh38 Loss DVL1 ACAP3 MIR6727 TAS1R3 MIR6808 CPSF3L MXRA8 CPTP PUSL1
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion LOC148413 SSU72 ATAD3B SCNN1D LOC102724312 MXRA8 VWA1 CCNL2 B3GALT6 MRPL20 MIB2 DVL1 CDK11B TTLL10 CPTP MIR200B TNFRSF4 LOC107985729 SDF4 AURKAIP1 ANKRD65 MIR6727 C1orf159 MIR6808 CPSF3L TMEM88B PUSL1 MIR200A UBE2J2 TTLL10-AS1 ACAP3 TNFRSF18 MIR429 TMEM240 TAS1R3 ATAD3A FAM132A ATAD3C MIR6726 MMP23B LINC01342 FNDC10
nsv1000169 Chr.1:1281678 - 1362354 on Build GRCh38 Gain DVL1 ACAP3 MIR6727 TAS1R3 MIR6808 CPSF3L MIR6726 SCNN1D MXRA8 CPTP PUSL1
esv2758912 Chr.1:1263940 - 1384492 on Build GRCh38 Loss AURKAIP1 MIR6727 MIR6808 CPSF3L SCNN1D MXRA8 PUSL1 UBE2J2 DVL1 ACAP3 TAS1R3 MIR6726 CPTP
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain LOC100130417 LOC148413 SCNN1D MXRA8 LOC105378948 CCNL2 B3GALT6 KLHL17 MRPL20 DVL1 LOC100288175 NOC2L TTLL10 CPTP MIR200B PERM1 TNFRSF4 PLEKHN1 SDF4 AURKAIP1 ANKRD65 MIR6727 C1orf159 MIR6808 CPSF3L TMEM88B PUSL1 MIR200A UBE2J2 ISG15 TTLL10-AS1 RNF223 ACAP3 TNFRSF18 SAMD11 MIR429 TAS1R3 FAM132A MIR6726 LOC107985728 AGRN HES4 LINC01342 LOC284600
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain TNFRSF4 SDF4 MIR6727 CPSF3L SCNN1D PUSL1 MIR200A B3GALT6 UBE2J2 TTLL10-AS1 ACAP3 TNFRSF18 MIR429 FAM132A MIR6726 TTLL10 MIR200B

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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