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See other AGPAT1 CNV Assays ›
Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32168681 on build GRCh38
Cytoband
6p21.32
Assay ID Hs00604604_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Within Exon 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_006411.3 7 1782 NP_006402.1
NM_032741.4 7 1567 NP_116130.2
XM_005248805.3 7 2085 XP_005248862.1
XM_005248806.2 7 1978 XP_005248863.1
XM_011514234.1 7 1749 XP_011512536.1
AF007145.1 7 1068 AAC19153.1
AF218034.1 7 1545 AAG17276.1
AK056346.1 5 1979
AK058025.1 9 1550
AK129818.1 7 1528
BC002402.2 7 1521 AAH02402.1
BC003007.1 7 1521 AAH03007.1
BC004310.1 7 1726 AAH04310.1
BC090849.1 7 1738 AAH90849.1
BM763275.1 1 350
U56417.1 7 1765 AAB58775.1
U75971.1 6 1456 AAB96378.1
Y09565.1 7 1556 CAA70758.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss PBX2 PPT2-EGFL8 EGFL8 RNF5 GPSM3 NOTCH4 PRRT1 MIR6833 FKBPL AGPAT1 TNXB LOC100507547 AGER PPT2 MIR6721 ATF6B
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss HLA-DRB1 SLC44A4 CFB BTNL2 DXO AGPAT1 ZBTB12 HLA-DQB1-AS1 CYP21A1P STK19 HLA-DRA AGER PPT2 ATF6B PPT2-EGFL8 RNF5 C4A C2 LOC100507547 CYP21A2 MIR6721 TNXA NELFE HSPA1B PBX2 EGFL8 C6orf10 MIR6833 FKBPL SNORD52 MIR1236 TNXB HCG23 LOC101929163 C2-AS1 SNORD48 C6orf48 HSPA1A EHMT2 GPSM3 NEU1 HLA-DRB6 NOTCH4 C4B PRRT1 SKIV2L HLA-DQB1 HLA-DQA1 HLA-DRB5
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss HLA-DRB1 PBX2 EGFL8 C6orf10 BTNL2 MIR6833 FKBPL AGPAT1 HLA-DQB1-AS1 CYP21A1P HLA-DRA TNXB AGER PPT2 HCG23 LOC101929163 HLA-DQA2 HLA-DQB2 ATF6B PPT2-EGFL8 RNF5 GPSM3 HLA-DRB6 NOTCH4 C4B PRRT1 C4A HLA-DQB1 LOC100507547 HLA-DQA1 HLA-DRB5 CYP21A2 MIR6721 MIR3135B TNXA
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss PBX2 EGFL8 CFB DXO MIR6833 FKBPL AGPAT1 CYP21A1P STK19 MIR1236 TNXB AGER PPT2 C2-AS1 ATF6B PPT2-EGFL8 RNF5 GPSM3 NOTCH4 C4B PRRT1 SKIV2L C4A C2 LOC100507547 CYP21A2 MIR6721 TNXA NELFE
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion SAPCD1 HLA-DRB1 GPANK1 DDX39B-AS1 SLC44A4 LTB CFB APOM BTNL2 SNORD84 DXO AGPAT1 ZBTB12 CYP21A1P STK19 HLA-DRA HCP5 LY6G6E AGER LY6G6D PPT2 ATP6V1G2 LOC100287329 ATF6B BAG6 PPT2-EGFL8 RNF5 LOC102725068 LY6G6F DDX39B SNORD117 MIR6832 C4A C2 LOC100507547 C6orf25 ABHD16A CYP21A2 MIR6721 MICB TNXA NELFE LSM2 HSPA1B PBX2 EGFL8 MIR4646 AIF1 CSNK2B LTA C6orf10 MSH5-SAPCD1 NFKBIL1 MIR6833 FKBPL SNORD52 MIR1236 MSH5 TNXB TNF LY6G5B LST1 HCG23 LOC101929163 C2-AS1 SNORD48 C6orf48 HSPA1A EHMT2 PRRC2A VARS ATP6V1G2-DDX39B GPSM3 NEU1 DDAH2 MCCD1 C6orf47 HLA-DRB6 NOTCH4 VWA7 C4B SNORA38 LY6G5C PRRT1 SKIV2L CLIC1 LY6G6C HSPA1L NCR3 HCG26 HLA-DRB5 SAPCD1-AS1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion HCG24 SAPCD1 DDX39B-AS1 LTB CFB APOM SNORD84 MIR6834 DXO AGPAT1 CYP21A1P MIR5004 HLA-DRA AGER HSD17B8 ATP6V1G2 ZBTB9 LOC100287329 KIFC1 ATF6B BAG6 HLA-DMB WDR46 SNORD117 C4A C2 VPS52 C6orf25 ABHD16A HLA-DOA MICB NELFE LSM2 HSPA1B EGFL8 AIF1 NFKBIL1 PHF1 B3GALT4 FKBPL MSH5 TNF SLC39A7 LY6G5B RXRB LOC101929163 C2-AS1 HLA-DQA2 TAP1 HLA-DQB2 HSPA1A RGL2 EHMT2 TAP2 VARS ATP6V1G2-DDX39B GPSM3 NEU1 DDAH2 HLA-DRB6 PPP1R2P1 VWA7 MIR219A1 SKIV2L HLA-DPB1 SYNGAP1 HCG25 CLIC1 HSPA1L PFDN6 MIR6873 HLA-DRB1 GPANK1 SLC44A4 BTNL2 TAPBP CUTA ZBTB12 HLA-DQB1-AS1 STK19 HCP5 LY6G6E LY6G6D PPT2 HLA-DOB RING1 PPT2-EGFL8 RNF5 LOC102725068 PSMB9 LY6G6F DDX39B HLA-DPB2 MIR6832 PSMB8 DAXX LOC100507547 CYP21A2 HLA-DMA MIR6721 TNXA PBX2 MIR4646 CSNK2B LTA C6orf10 PSMB8-AS1 MSH5-SAPCD1 MIR6833 SNORD52 COL11A2 MIR1236 TNXB HLA-DPA1 LST1 HCG23 LOC100294145 SNORD48 C6orf48 PRRC2A MCCD1 C6orf47 NOTCH4 C4B SNORA38 LY6G5C PRRT1 HLA-DQB1 ZBTB22 LY6G6C NCR3 RPS18 HCG26 HLA-DQA1 HLA-DRB5 MIR3135B BRD2 SAPCD1-AS1
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss PBX2 PPT2-EGFL8 EGFL8 RNF5 GPSM3 NOTCH4 PRRT1 MIR6833 FKBPL AGPAT1 TNXB LOC100507547 AGER PPT2 MIR6721 ATF6B
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion HCG24 SAPCD1 DDX39B-AS1 LTB CFB APOM SNORD84 MIR6834 DXO AGPAT1 CYP21A1P MIR5004 HLA-DRA AGER HSD17B8 ATP6V1G2 ZBTB9 LOC100287329 KIFC1 ATF6B BAG6 HLA-DMB WDR46 SNORD117 C4A C2 VPS52 C6orf25 ABHD16A HLA-DOA MICB NELFE LSM2 HSPA1B EGFL8 AIF1 NFKBIL1 PHF1 B3GALT4 FKBPL MSH5 TNF SLC39A7 LY6G5B RXRB LOC101929163 C2-AS1 HLA-DQA2 TAP1 HLA-DQB2 HSPA1A RGL2 EHMT2 TAP2 VARS ATP6V1G2-DDX39B GPSM3 NEU1 DDAH2 HLA-DRB6 PPP1R2P1 VWA7 MIR219A1 SKIV2L HLA-DPB1 SYNGAP1 HCG25 CLIC1 HSPA1L PFDN6 MIR6873 HLA-DRB1 GPANK1 SLC44A4 BTNL2 TAPBP CUTA ZBTB12 HLA-DQB1-AS1 STK19 HCP5 LY6G6E LY6G6D PPT2 HLA-DOB RING1 PPT2-EGFL8 RNF5 LOC102725068 PSMB9 LY6G6F DDX39B HLA-DPB2 MIR6832 PSMB8 DAXX LOC100507547 CYP21A2 HLA-DMA MIR6721 TNXA PBX2 MIR4646 CSNK2B LTA C6orf10 PSMB8-AS1 MSH5-SAPCD1 MIR6833 SNORD52 COL11A2 MIR1236 TNXB HLA-DPA1 LST1 HCG23 LOC100294145 SNORD48 C6orf48 PRRC2A MCCD1 C6orf47 NOTCH4 C4B SNORA38 LY6G5C PRRT1 HLA-DQB1 ZBTB22 LY6G6C NCR3 RPS18 HCG26 HLA-DQA1 HLA-DRB5 MIR3135B BRD2 SAPCD1-AS1
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss SAPCD1 GPANK1 MICA DDX39B-AS1 SLC44A4 LTB CFB APOM BTNL2 SNORD84 DXO AGPAT1 ZBTB12 CYP21A1P STK19 HLA-DRA HCP5 LY6G6E AGER LY6G6D PPT2 ATP6V1G2 LOC100287329 ATF6B BAG6 PPT2-EGFL8 RNF5 LOC102725068 LY6G6F DDX39B SNORD117 MIR6832 C4A C2 HLA-B LOC100507547 C6orf25 ABHD16A CYP21A2 MIR6721 MICB TNXA NELFE LSM2 HSPA1B PBX2 EGFL8 MIR4646 AIF1 CSNK2B LTA C6orf10 MSH5-SAPCD1 NFKBIL1 MIR6833 FKBPL SNORD52 MIR1236 MSH5 TNXB TNF LY6G5B LST1 HCG23 LOC101929163 C2-AS1 MIR6891 SNORD48 C6orf48 HSPA1A EHMT2 PRRC2A VARS ATP6V1G2-DDX39B GPSM3 NEU1 DDAH2 MCCD1 C6orf47 NOTCH4 VWA7 C4B SNORA38 LY6G5C PRRT1 SKIV2L CLIC1 LY6G6C HSPA1L NCR3 HCG26 SAPCD1-AS1

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