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See other TRAF7 CNV Assays ›
Gene Symbol
TRAF7
Assay Reference Genome
Location

Chr.16:2173801 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00609003_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 84231

Gene Name:

 TNF receptor associated factor 7

Gene Aliases:

 RFWD1, RNF119

Location:

 Chr.16:2155752-2178129 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 11 - Intron 12
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRAF7 NM_032271.2 NP_115647.2
XM_005255627.4 XP_005255684.1
XM_011522700.1 XP_011521002.1
AK090624.1
AL136921.1 CAB66855.1
AY569455.1 AAS68363.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication SSTR5 LOC729652 MIR3677 LOC101929280 PTX4 MIR1225 MIR3176 TSC2 TMEM204 MIR6511B1 PKD1 RPUSD1 NOXO1 SPSB3 TPSG1 LOC105371049 SLC9A3R2 FBXL16 C1QTNF8 KCTD5 NARFL FLJ42627 CEMP1 HAGHL LOC105371184 MEIOB PRR25 C16orf59 LOC107984876 CHTF18 LMF1 GNG13 IFT140 UNKL CCNF LUC7L SNORA64 BRICD5 RAB40C WASIR2 POLR3K MLST8 ARHGDIG UBE2I E4F1 LINC00254 RPL23AP5 MPG RGS11 PDIA2 MIR6768 CASKIN1 ABCA17P LOC106660606 LOC100134368 MIR4516 CCDC78 LOC105371047 PIGQ LOC100287175 JMJD8 PDPK1 HAGH FAHD1 CLCN7 RAB26 MIR3178 C16orf91 AMDHD2 RAB11FIP3 SNORD60 RNPS1 WFIKKN1 NME3 CRAMP1 LMF1-AS1 SNRNP25 DECR2 SNORA10 IGFALS SOX8 SYNGR3 SSTR5-AS1 CAPN15 METTL26 LOC107987233 MRPL28 HBA1 LOC105371046 TPSB2 AXIN1 RHBDF1 RPS2 RHOT2 ZNF598 NDUFB10 TRAF7 HBQ1 WDR24 CCDC154 ATP6V0C HBA2 PRSS27 ECI1 STUB1 MRPS34 RPL3L NUBP2 PGP MIR3177 ERVK13-1 MAPK8IP3 PRSS29P NPRL3 TSR3 MIR662 SNHG19 MIR3180-5 DDX11L10 DNASE1L2 MCRIP2 GFER TMEM8A HBZ FAM234A GNPTG LINC00235 SNHG9 MIR6767 CACNA1H MIR4717 NTHL1 MSLN SNORA78 HS3ST6 RHBDL1 METRN PRR35 BAIAP3 ABCA3 MIR5587 WDR90 LOC652276 EME2 TELO2 FAM173A NTN3 HBM LOC105371038 RNF151 NME4 TPSD1 NPW HN1L TBL3 LOC105371045 TBC1D24 NHLRC4 MSRB1 TPSAB1 MIR940 MIR6859-4
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss NTHL1 MLST8 MIR1225 E4F1 TSC2 ZNF598 MIR6511B1 TRAF7 PKD1 NOXO1 CASKIN1 ECI1 MIR4516 LOC105371049 SLC9A3R2 PGP SNHG19 MIR3180-5 DNASE1L2 RAB26 NPW TBL3 GFER SNORD60 RNPS1 BRICD5 SYNGR3
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss MLST8 MIR1225 SNHG19 MIR3180-5 DNASE1L2 E4F1 TSC2 RAB26 MIR6511B1 TRAF7 PKD1 SNORD60 CASKIN1 ECI1 MIR4516 LOC105371049 BRICD5 PGP
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss MIR3677 MLST8 SNHG19 DNASE1L2 E4F1 RAB26 TRAF7 SNORD60 RNPS1 CASKIN1 LOC106660606 ECI1 BRICD5 PGP MIR940
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss TRAF7 PKD1 SNORD60 MIR1225 SNHG19 MIR3180-5 CASKIN1 MIR4516 LOC105371049 TSC2 RAB26 MIR6511B1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR6767 MIR4717 LOC729652 MIR3677 MLST8 MIR1225 ABCA3 E4F1 TSC2 MIR6511B1 TRAF7 MIR6768 PKD1 ATP6V0C CASKIN1 ABCA17P LOC652276 LOC106660606 ECI1 MIR4516 LOC105371049 PGP NTN3 PDPK1 CEMP1 SNHG19 MIR3180-5 DNASE1L2 RAB26 C16orf59 MIR3178 AMDHD2 SNORD60 RNPS1 TBC1D24 CCNF BRICD5 MIR940
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss TRAF7 RNPS1 MIR3677 MLST8 CASKIN1 LOC106660606 ECI1 DNASE1L2 E4F1 BRICD5 PGP MIR940
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MIR4717 MIR3677 MLST8 SNHG19 DNASE1L2 ABCA3 E4F1 RAB26 TRAF7 SNORD60 RNPS1 CASKIN1 LOC106660606 ECI1 BRICD5 PGP MIR940

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More Information


Additional Information:

For this assay, SNP(s) [rs533790857] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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