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See other LIME1 CNV Assays ›
Gene Symbol
LIME1
Assay Reference Genome
Location

Chr.20:63739070 on build GRCh38
Cytoband
20q13.33
Assay ID Hs00620345_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 54923

Gene Name:

 Lck interacting transmembrane adaptor 1

Gene Aliases:

 LIME, dJ583P15.4

Location:

 Chr.20:63735701-63739107 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LIME1 NM_001305654.1 NP_001292583.1
NM_001305655.1 NP_001292584.1
NM_017806.3 NP_060276.2
AI763397.1
AK000413.1 BAA91148.1
AK054722.1
AY203957.1 AAP34480.1
BC017016.1 AAH17016.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2722959 Chr.20:63715664 - 63806918 on Build GRCh38 Deletion ZGPAT LIME1 ZBTB46 SLC2A4RG
nsv953308 Chr.20:63650148 - 63831847 on Build GRCh38 Deletion ZGPAT RTEL1-TNFRSF6B LIME1 ZBTB46 SLC2A4RG RTEL1 STMN3 TNFRSF6B ZBTB46-AS1 ARFRP1
nsv586615 Chr.20:63734204 - 63741603 on Build GRCh38 Gain ZGPAT LIME1 SLC2A4RG
dgv523n27 Chr.20:63738644 - 63789659 on Build GRCh38 Loss LIME1 ZBTB46 SLC2A4RG
nsv586644 Chr.20:63738872 - 63741460 on Build GRCh38 Gain LIME1 SLC2A4RG
nsv586614 Chr.20:63725275 - 63741460 on Build GRCh38 Gain ZGPAT LIME1 SLC2A4RG
nsv586618 Chr.20:63736025 - 63740688 on Build GRCh38 Gain ZGPAT LIME1 SLC2A4RG
nsv1160690 Chr.20:63639552 - 63744287 on Build GRCh38 Deletion ZGPAT RTEL1-TNFRSF6B LIME1 ZBTB46 SLC2A4RG RTEL1 STMN3 TNFRSF6B ARFRP1
esv7227 Chr.20:63715550 - 63807161 on Build GRCh38 Loss ZGPAT LIME1 ZBTB46 SLC2A4RG
nsv428381 Chr.20:63583375 - 64334167 on Build GRCh38 Gain+Loss OPRL1 RTEL1-TNFRSF6B UCKL1-AS1 MIR6813 MIR941-1 DNAJC5 LINC00266-1 PCMTD2 MYT1 PRPF6 RGS19 ZGPAT LINC00176 C20orf181 ZBTB46 RTEL1 TNFRSF6B NPBWR2 MIR1914 GMEB2 SLC2A4RG LOC100505771 STMN3 LKAAEAR1 ZNF512B ZBTB46-AS1 SOX18 MIR941-2 UCKL1 TPD52L2 SAMD10 LIME1 MIR647 MIR941-3 TCEA2 ABHD16B MIR941-5 MIR941-4 ARFRP1
nsv1059142 Chr.20:63731978 - 63798885 on Build GRCh38 Gain ZGPAT LIME1 ZBTB46 SLC2A4RG
nsv470563 Chr.20:63486715 - 63793308 on Build GRCh38 Loss RTEL1-TNFRSF6B PPDPF SLC2A4RG LOC100505771 STMN3 PTK6 SRMS ZGPAT FNDC11 LIME1 HELZ2 EEF1A2 ZBTB46 RTEL1 TNFRSF6B GMEB2 ARFRP1
dgv7681n54 Chr.20:63737667 - 63739379 on Build GRCh38 Loss LIME1
esv29394 Chr.20:63737285 - 63740490 on Build GRCh38 Loss LIME1 SLC2A4RG
dgv7678n54 Chr.20:63737451 - 63739060 on Build GRCh38 Loss LIME1
esv2758806 Chr.20:63470996 - 63745014 on Build GRCh38 Gain+Loss RTEL1-TNFRSF6B KCNQ2 PPDPF SLC2A4RG LOC100505771 STMN3 PTK6 SRMS ZGPAT FNDC11 LIME1 HELZ2 EEF1A2 ZBTB46 RTEL1 TNFRSF6B GMEB2 ARFRP1

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s)


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