Hs00649403_cn

• Gene Symbol: CDH15
• Assay Reference Genome Location: Chr.16:89190469 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 1013
• Gene Name: cadherin 15
• Gene Aliases: CDH14, CDH3, CDHM, MCAD, MRD3
• Location: Chr.16:89171755-89195492 on Build GRCh38
• Assay Gene Location: Overlaps Exon 8 - Intron 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDH15	NM_004933.2			NP_004924.1
	BC008951.2			AAH08951.1
	D83542.1			BAA12012.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv952072	Chr.16:89032193 - 89201992 on Build GRCh38	Deletion	ACSF3 CDH15 LINC00304 SLC22A31 LOC400558
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	ACSF3 CDT1 APRT LOC107987238 LOC105371409 CDH15 LINC00304 CTU2 LOC101927793 ZNF778 PABPN1L LOC100129697 CBFA2T3 MIR4722 GALNS SLC22A31 LOC339059 TRAPPC2L LOC100289580 LOC400558 PIEZO1
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	ACSF3 CDT1 APRT LOC107987238 LOC105371409 CDH15 LINC00304 LOC101927793 PABPN1L LOC100129697 CBFA2T3 GALNS SLC22A31 TRAPPC2L LOC400558
nsv573724	Chr.16:89100686 - 89217401 on Build GRCh38	Loss	ACSF3 CDH15 LINC00304 SLC22A31 LOC400558 ZNF778
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	ACSF3 CDT1 APRT LOC107987238 LOC105371409 CDH15 LINC00304 LOC105371414 LOC101927793 ZNF778 PABPN1L LOC100287036 LOC100129697 CBFA2T3 GALNS SLC22A31 LOC339059 TRAPPC2L LOC100289580 LOC400558 ANKRD11 PIEZO1
nsv573729	Chr.16:89189723 - 89193067 on Build GRCh38	Loss	CDH15
dgv3066n100	Chr.16:89067685 - 89301626 on Build GRCh38	Gain	ACSF3 CDH15 LINC00304 LOC105371414 SLC22A31 LOC400558 ANKRD11 ZNF778
nsv1078407	Chr.16:89186791 - 89191492 on Build GRCh38	Duplication	CDH15
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	CTU2 TCF25 TUBB8P7 DBNDD1 SNAI3 ZNF778 SPATA33 CYBA PABPN1L AFG3L1P LOC339059 LOC400558 CPNE7 GAS8 MC1R GAS8-AS1 CDH15 LOC105371414 CENPBD1 PRDM7 LOC100129697 LOC101927817 TUBB3 VPS9D1 GALNS FAM157C ZNF276 ANKRD11 SNORD68 LOC107984817 ACSF3 RNF166 APRT LOC107987238 LOC105371409 IL17C FANCA DPEP1 LOC105371419 LOC101927793 SPIRE2 SPG7 MVD CBFA2T3 MIR4722 SPATA2L PIEZO1 CDT1 LINC00304 DEF8 CDK10 RPL13 CHMP1A LOC100287036 SNAI3-AS1 URAHP VPS9D1-AS1 SLC22A31 TRAPPC2L LOC100289580
esv2763149	Chr.16:89179547 - 89368114 on Build GRCh38	Gain	LOC100287036 CDH15 LOC105371414 SLC22A31 ANKRD11 ZNF778
dgv5320n54	Chr.16:89114475 - 89197443 on Build GRCh38	Loss	ACSF3 CDH15 LINC00304 SLC22A31 LOC400558
nsv509638	Chr.16:89152681 - 89296203 on Build GRCh38	Insertion	ACSF3 CDH15 LINC00304 LOC105371414 SLC22A31 LOC400558 ANKRD11 ZNF778
nsv573727	Chr.16:89169527 - 89193067 on Build GRCh38	Loss	CDH15
nsv1141297	Chr.16:89182392 - 89191792 on Build GRCh38	Duplication	CDH15

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
adherens junction organization
positive regulation of muscle cell differentiation

Function(s)

calcium ion binding
protein binding