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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2595848 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00649860_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 14 - Intron 15
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 NP_001248745.1
NM_002613.4 NP_002604.1
NM_031268.5 NP_112558.2
XM_011522521.2 XP_011520823.1
XM_011522523.2 XP_011520825.1
XM_017023271.1 XP_016878760.1
XM_017023272.1 XP_016878761.1
XM_017023273.1 XP_016878762.1
XM_017023274.1 XP_016878763.1
XM_017023275.1 XP_016878764.1
XM_017023276.1 XP_016878765.1
XM_017023277.1 XP_016878766.1
AB209835.1 BAD93072.1
AF017995.1 AAC51825.1
AK131060.1
AK222581.1 BAD96301.1
BC006339.2 AAH06339.2
BC012103.1 AAH12103.1
BC033494.1 AAH33494.1
CR536517.1 CAG38755.1
Y15056.1 CAA75341.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LUC7L CRAMP1 RGS11 SNORD60 RPUSD1 ZNF598 NME4 LOC729652 MIR4717 BRICD5 LOC107984876 LINC00235 KCTD5 PIGQ TRAF7 MRPS34 DDX11L10 LOC105371045 SNORA78 WASIR2 PGP LOC105371047 SSTR5 AMDHD2 LOC105371046 CEMP1 HBQ1 FAHD1 ATP6V0C E4F1 IGFALS LOC105371184 FLJ42627 MIR3176 SNORA10 STUB1 TBC1D24 EME2 CACNA1H MIR3677 NHLRC4 SSTR5-AS1 CASKIN1 CCDC154 CCNF CHTF18 SNORA64 GNG13 LMF1 PTX4 RAB11FIP3 NPW MLST8 WDR24 LOC101929280 TPSAB1 HAGHL IFT140 METRN PRSS27 PDPK1 SNRNP25 MSLN TMEM8A PRSS29P MIR940 DECR2 SNHG9 LOC100287175 MIR3177 FBXL16 SLC9A3R2 POLR3K SPSB3 RAB26 CCDC78 MIR6767 PRR25 CLCN7 NARFL LOC100134368 RHBDF1 TPSB2 WDR90 BAIAP3 NPRL3 ECI1 C1QTNF8 TMEM204 C16orf59 HAGH UNKL MIR6768 UBE2I TPSD1 RAB40C RHBDL1 MAPK8IP3 MSRB1 JMJD8 MIR4516 MIR6511B1 SNHG19 AXIN1 LOC106660606 MIR3178 LMF1-AS1 WFIKKN1 RNPS1 RPL23AP5 TSC2 ERVK13-1 NTHL1 ABCA17P LOC652276 MIR662 SYNGR3 RNF151 HBA1 RHOT2 NME3 LINC00254 CAPN15 NOXO1 MIR5587 MRPL28 HBM NUBP2 PKD1 TSR3 HBA2 MIR3180-5 MIR6859-4 LOC105371049 NTN3 TPSG1 PDIA2 RPS2 LOC105371038 LOC107987233 RPL3L GNPTG PRR35 FAM234A ARHGDIG DNASE1L2 FAM173A METTL26 HBZ NDUFB10 MPG GFER MCRIP2 SOX8 HS3ST6 HN1L C16orf91 TELO2 MEIOB MIR1225 ABCA3 TBL3
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss AMDHD2 CEMP1 SRRM2-AS1 MIR3178 ATP6V0C PRSS33 TCEB2 KCTD5 FLJ42627 PRSS27 PRSS21 ERVK13-1 PDPK1 TBC1D24 LOC652276 PRSS41 SRRM2
dgv2693n100 Chr.16:2593295 - 2676863 on Build GRCh38 Gain FLJ42627 ERVK13-1 PDPK1 LOC652276
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain PDPK1 LOC652276
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss FLJ42627 AMDHD2 ERVK13-1 PDPK1 TBC1D24 CEMP1 LOC652276 MIR3178 ATP6V0C
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain CCNF SNORD60 ECI1 C16orf59 PKD1 LOC729652 MIR4717 MIR6768 BRICD5 MLST8 MIR3180-5 LOC105371049 NTN3 TRAF7 PDPK1 MIR940 PGP MIR4516 MIR6511B1 SNHG19 DNASE1L2 AMDHD2 CEMP1 LOC106660606 MIR3178 RAB26 ATP6V0C E4F1 MIR6767 RNPS1 TSC2 TBC1D24 ABCA17P LOC652276 MIR3677 MIR1225 ABCA3 CASKIN1
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss KCTD5 FLJ42627 PRSS27 ERVK13-1 PDPK1 SRRM2-AS1 LOC652276 SRRM2
dgv780e212 Chr.16:2595646 - 2700191 on Build GRCh38 Gain KCTD5 FLJ42627 ERVK13-1 PDPK1 LOC652276

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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