Name: [Hs00652573_cn] [PHF1]
Creator: Thermo Fisher Scientific
Keywords: [PHF1] Assay, [PHD finger protein 1] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	5252
Gene Name:	PHD finger protein 1
Gene Aliases:	MTF2L2, PCL1, PHF2, TDRD19C, hPHF1
Location:	Chr.6:33410751-33416453 on Build GRCh38
Assay Gene Location:	Overlaps - Exon 16

Gene Symbol	Transcript Accession	Protein ID
PHF1	NM_002636.4	NP_002627.1
	NM_024165.2	NP_077084.1
	NR_027692.1
	XM_011514662.1	XP_011512964.1
	XM_011514663.1	XP_011512965.1
	XM_011514664.1	XP_011512966.1
	XM_011514665.1	XP_011512967.1
	XM_011514666.1	XP_011512968.1
	XM_011514669.1	XP_011512971.1
	XM_017010939.1	XP_016866428.1
	AF029678.1	AAC52062.1
	AF052205.1	AAC13273.1
	AK225913.1
	BC008834.2	AAH08834.1
	CB242267.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv830637	Chr.6:33361588 - 33542927 on Build GRCh38	Loss	PHF1 SYNGAP1 ZBTB9 KIFC1 MIR5004 CUTA
nsv830635	Chr.6:33270228 - 33446010 on Build GRCh38	Loss	MIR6834 DAXX RGL2 KIFC1 MIR5004 VPS52 B3GALT4 WDR46 PHF1 TAPBP SYNGAP1 ZBTB22 PFDN6 CUTA MIR6873 RPS18
nsv1073969	Chr.6:31456422 - 33480523 on Build GRCh38	Deletion	HCG23 DAXX HLA-DQA2 PPP1R2P1 HLA-DRB5 VPS52 NOTCH4 PHF1 SYNGAP1 HCP5 LY6G6D HCG24 AIF1 HLA-DMA LY6G6F MSH5 RING1 AGER CYP21A1P ABHD16A ZBTB9 PPT2 DXO HSPA1L SLC39A7 PSMB9 HLA-DPB2 SAPCD1-AS1 HLA-DMB NFKBIL1 TAP2 BTNL2 GPSM3 HLA-DQB1-AS1 PSMB8-AS1 CYP21A2 HLA-DRB6 HSPA1B LST1 MIR6834 BRD2 AGPAT1 RGL2 TNXB KIFC1 EHMT2 MIR5004 B3GALT4 LY6G6C RXRB HCG25 HLA-DPB1 RNF5 MIR6721 C6orf48 HCG26 STK19 EGFL8 HLA-DOA MIR4646 TNXA MCCD1 SLC44A4 LOC100287329 LOC100294145 ZBTB22 APOM HSD17B8 DDAH2 C4A LTA SNORD84 BAG6 MIR1236 MICB MIR6832 SAPCD1 C6orf25 HLA-DRA HLA-DOB SNORD52 TNF PFDN6 SNORD48 PSMB8 HLA-DQB2 DDX39B C6orf47 LOC102725068 CSNK2B RPS18 PBX2 PRRC2A NEU1 HLA-DQB1 HSPA1A HLA-DRB1 HLA-DQA1 LY6G5C HLA-DPA1 GPANK1 LSM2 SNORD117 ATF6B LOC101929163 VWA7 C2 CUTA SNORA38 C4B PPT2-EGFL8 ZBTB12 NELFE CFB COL11A2 ATP6V1G2 WDR46 MIR3135B VARS LTB LY6G5B NCR3 PRRT1 MIR219A1 TAP1 ATP6V1G2-DDX39B MSH5-SAPCD1 DDX39B-AS1 MIR6833 TAPBP CLIC1 C6orf10 LOC100507547 C2-AS1 LY6G6E FKBPL SKIV2L MIR6873
nsv1112900	Chr.6:31455323 - 33480423 on Build GRCh38	Deletion	HCG23 DAXX HLA-DQA2 PPP1R2P1 HLA-DRB5 VPS52 NOTCH4 PHF1 SYNGAP1 HCP5 LY6G6D HCG24 AIF1 HLA-DMA LY6G6F MSH5 RING1 AGER CYP21A1P ABHD16A ZBTB9 PPT2 DXO HSPA1L SLC39A7 PSMB9 HLA-DPB2 SAPCD1-AS1 HLA-DMB NFKBIL1 TAP2 BTNL2 GPSM3 HLA-DQB1-AS1 PSMB8-AS1 CYP21A2 HLA-DRB6 HSPA1B LST1 MIR6834 BRD2 AGPAT1 RGL2 TNXB KIFC1 EHMT2 MIR5004 B3GALT4 LY6G6C RXRB HCG25 HLA-DPB1 RNF5 MIR6721 C6orf48 HCG26 STK19 EGFL8 HLA-DOA MIR4646 TNXA MCCD1 SLC44A4 LOC100287329 LOC100294145 ZBTB22 APOM HSD17B8 DDAH2 C4A LTA SNORD84 BAG6 MIR1236 MICB MIR6832 SAPCD1 C6orf25 HLA-DRA HLA-DOB SNORD52 TNF PFDN6 SNORD48 PSMB8 HLA-DQB2 DDX39B C6orf47 LOC102725068 CSNK2B RPS18 PBX2 PRRC2A NEU1 HLA-DQB1 HSPA1A HLA-DRB1 HLA-DQA1 LY6G5C HLA-DPA1 GPANK1 LSM2 SNORD117 ATF6B LOC101929163 VWA7 C2 CUTA SNORA38 C4B PPT2-EGFL8 ZBTB12 NELFE CFB COL11A2 ATP6V1G2 WDR46 MIR3135B VARS LTB LY6G5B NCR3 PRRT1 MIR219A1 TAP1 ATP6V1G2-DDX39B MSH5-SAPCD1 DDX39B-AS1 MIR6833 TAPBP CLIC1 C6orf10 LOC100507547 C2-AS1 LY6G6E FKBPL SKIV2L MIR6873
nsv1119076	Chr.6:32595823 - 33480623 on Build GRCh38	Deletion	MIR6834 DAXX HLA-DQA2 BRD2 RGL2 KIFC1 PPP1R2P1 MIR5004 COL11A2 VPS52 B3GALT4 RXRB WDR46 PHF1 HCG25 HLA-DPB1 MIR3135B HLA-DOB SYNGAP1 PFDN6 HCG24 HLA-DMA PSMB8 HLA-DQB2 RPS18 HLA-DOA RING1 HLA-DQB1 ZBTB9 MIR219A1 TAP1 SLC39A7 HLA-DQA1 PSMB9 HLA-DPA1 HLA-DPB2 LOC100294145 HLA-DMB TAP2 TAPBP HLA-DQB1-AS1 ZBTB22 HSD17B8 CUTA PSMB8-AS1 MIR6873
nsv602832	Chr.6:33414464 - 33552444 on Build GRCh38	Loss	PHF1 SYNGAP1 ZBTB9 MIR5004 CUTA