Name: [Hs00652573_cn] [PHF1]
Creator: Thermo Fisher Scientific
Keywords: [PHF1] Assay, [PHD finger protein 1] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	5252
Gene Name:	PHD finger protein 1
Gene Aliases:	MTF2L2, PCL1, PHF2, TDRD19C, hPHF1
Location:	Chr.6:33410751-33416453 on Build GRCh38
Assay Gene Location:	Overlaps - Exon 16

Gene Symbol	Transcript Accession	Protein ID
PHF1	NM_002636.4	NP_002627.1
	NM_024165.2	NP_077084.1
	NR_027692.1
	XM_011514662.1	XP_011512964.1
	XM_011514663.1	XP_011512965.1
	XM_011514664.1	XP_011512966.1
	XM_011514665.1	XP_011512967.1
	XM_011514666.1	XP_011512968.1
	XM_011514669.1	XP_011512971.1
	XM_017010939.1	XP_016866428.1
	AF029678.1	AAC52062.1
	AF052205.1	AAC13273.1
	AK225913.1
	BC008834.2	AAH08834.1
	CB242267.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv830637	Chr.6:33361588 - 33542927 on Build GRCh38	Loss	MIR5004 PHF1 ZBTB9 KIFC1 CUTA SYNGAP1
nsv830635	Chr.6:33270228 - 33446010 on Build GRCh38	Loss	RGL2 PFDN6 B3GALT4 RPS18 PHF1 WDR46 SYNGAP1 VPS52 TAPBP MIR6834 MIR5004 KIFC1 DAXX CUTA ZBTB22 MIR6873
nsv1073969	Chr.6:31456422 - 33480523 on Build GRCh38	Deletion	PFDN6 EGFL8 RPS18 SNORD52 NEU1 CYP21A2 ABHD16A GPANK1 VPS52 MIR6721 MIR3135B LOC101929163 LOC100294145 C6orf47 HLA-DRA KIFC1 LSM2 HLA-DPB1 VWA7 MSH5 ZBTB22 SAPCD1-AS1 HLA-DOB FKBPL NFKBIL1 PSMB8-AS1 HLA-DPB2 RING1 AGPAT1 HLA-DRB5 LY6G6F AIF1 HLA-DMB LY6G5C DDAH2 ATP6V1G2 RGL2 AGER LOC102725068 TNXB B3GALT4 PHF1 HCG25 MSH5-SAPCD1 LY6G6C EHMT2 MIR1236 HLA-DRB6 LY6G6E PRRC2A ZBTB9 PPP1R2P1 SLC44A4 HLA-DQB2 HSPA1L MIR6873 DDX39B-AS1 NELFE RNF5 C4A HCG24 SNORA38 MIR6833 HLA-DQA1 HLA-DOA DXO TNF HCG26 HLA-DRB1 COL11A2 C6orf10 MIR6834 MCCD1 HLA-DPA1 ATF6B SNORD84 PPT2 LTA HSPA1A LOC100507547 LY6G5B LY6G6D STK19 NCR3 CLIC1 LST1 TAP2 RXRB PRRT1 NOTCH4 PPT2-EGFL8 MIR219A1 ZBTB12 HSD17B8 PSMB9 DAXX GPSM3 CUTA C4B ATP6V1G2-DDX39B HCG23 C6orf25 MIR4646 HCP5 SNORD48 CYP21A1P SLC39A7 VARS APOM HLA-DQB1-AS1 TNXA HLA-DQB1 SKIV2L HSPA1B LOC100287329 DDX39B CFB BTNL2 SNORD117 TAP1 HLA-DMA PSMB8 C2 CSNK2B PBX2 SAPCD1 MICB C2-AS1 BRD2 MIR6832 C6orf48 WDR46 HLA-DQA2 SYNGAP1 TAPBP MIR5004 LTB BAG6
nsv1112900	Chr.6:31455323 - 33480423 on Build GRCh38	Deletion	PFDN6 EGFL8 RPS18 SNORD52 NEU1 CYP21A2 ABHD16A GPANK1 VPS52 MIR6721 MIR3135B LOC101929163 LOC100294145 C6orf47 HLA-DRA KIFC1 LSM2 HLA-DPB1 VWA7 MSH5 ZBTB22 SAPCD1-AS1 HLA-DOB FKBPL NFKBIL1 PSMB8-AS1 HLA-DPB2 RING1 AGPAT1 HLA-DRB5 LY6G6F AIF1 HLA-DMB LY6G5C DDAH2 ATP6V1G2 RGL2 AGER LOC102725068 TNXB B3GALT4 PHF1 HCG25 MSH5-SAPCD1 LY6G6C EHMT2 MIR1236 HLA-DRB6 LY6G6E PRRC2A ZBTB9 PPP1R2P1 SLC44A4 HLA-DQB2 HSPA1L MIR6873 DDX39B-AS1 NELFE RNF5 C4A HCG24 SNORA38 MIR6833 HLA-DQA1 HLA-DOA DXO TNF HCG26 HLA-DRB1 COL11A2 C6orf10 MIR6834 MCCD1 HLA-DPA1 ATF6B SNORD84 PPT2 LTA HSPA1A LOC100507547 LY6G5B LY6G6D STK19 NCR3 CLIC1 LST1 TAP2 RXRB PRRT1 NOTCH4 PPT2-EGFL8 MIR219A1 ZBTB12 HSD17B8 PSMB9 DAXX GPSM3 CUTA C4B ATP6V1G2-DDX39B HCG23 C6orf25 MIR4646 HCP5 SNORD48 CYP21A1P SLC39A7 VARS APOM HLA-DQB1-AS1 TNXA HLA-DQB1 SKIV2L HSPA1B LOC100287329 DDX39B CFB BTNL2 SNORD117 TAP1 HLA-DMA PSMB8 C2 CSNK2B PBX2 SAPCD1 MICB C2-AS1 BRD2 MIR6832 C6orf48 WDR46 HLA-DQA2 SYNGAP1 TAPBP MIR5004 LTB BAG6
nsv602832	Chr.6:33414464 - 33552444 on Build GRCh38	Loss	MIR5004 PHF1 ZBTB9 CUTA SYNGAP1
nsv1119076	Chr.6:32595823 - 33480623 on Build GRCh38	Deletion	SLC39A7 RGL2 PFDN6 B3GALT4 HLA-DQB1-AS1 RPS18 PHF1 HLA-DQB1 HCG25 VPS52 COL11A2 MIR6834 TAP1 HLA-DPA1 HLA-DMA MIR3135B LOC100294145 PSMB8 ZBTB9 KIFC1 PPP1R2P1 HLA-DPB1 HLA-DQB2 ZBTB22 MIR6873 HLA-DOB PSMB8-AS1 HLA-DPB2 BRD2 RING1 WDR46 HLA-DQA2 HCG24 SYNGAP1 TAP2 RXRB TAPBP MIR219A1 HSD17B8 MIR5004 HLA-DMB PSMB9 DAXX CUTA HLA-DQA1 HLA-DOA