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See other NELFE CNV Assays ›
Gene Symbol
NELFE
Assay Reference Genome
Location

Chr.6:31954440 on build GRCh38
Cytoband
6p21.33
Assay ID Hs00657495_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 7936

Gene Name:

 negative elongation factor complex member E

Gene Aliases:

 D6S45, NELF-E, RD, RDBP, RDP

Location:

 Chr.6:31952087-31959087 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 7 - Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
NELFE NM_002904.5 NP_002895.3
XM_006715205.3 XP_006715268.1
XM_011514913.2 XP_011513215.1
XM_017011299.1 XP_016866788.1
AK300717.1
AK300898.1
AK302652.1
AK303152.1
BC025235.1 AAH25235.1
BC050617.2 AAH50617.1
JQ313904.1
L03411.1 AAC37523.1
X16105.1 CAA34231.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss ATF6B HLA-DRB6 SNORD48 MIR6833 C4A ZBTB12 CFB C6orf48 EHMT2 AGER HLA-DRB1 SKIV2L STK19 LOC100507547 HLA-DQA1 C2-AS1 SNORD52 FKBPL AGPAT1 TNXA PPT2 CYP21A2 MIR1236 HLA-DRA NEU1 HLA-DQB1-AS1 PBX2 HLA-DQB1 GPSM3 PRRT1 HLA-DRB5 C4B LOC101929163 NOTCH4 NELFE HCG23 CYP21A1P HSPA1B BTNL2 MIR6721 TNXB DXO SLC44A4 PPT2-EGFL8 EGFL8 C2 RNF5 HSPA1A C6orf10
nsv428141 Chr.6:31903735 - 32125066 on Build GRCh38 Gain+Loss ATF6B SKIV2L STK19 CYP21A1P C2-AS1 C4A TNXB CFB DXO TNXA C4B CYP21A2 MIR1236 C2 NELFE
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion ATF6B HLA-DRB6 SNORD48 MIR6833 MIR6832 C4A BAG6 ZBTB12 CFB C6orf48 CLIC1 ATP6V1G2 EHMT2 MSH5 DDAH2 AGER ATP6V1G2-DDX39B HLA-DRB1 MIR4646 SKIV2L STK19 LOC100507547 LST1 C2-AS1 CSNK2B LSM2 APOM SNORD52 LY6G6D FKBPL SNORD84 GPANK1 SAPCD1 AGPAT1 TNXA PRRC2A PPT2 LY6G6C CYP21A2 LOC102725068 MIR1236 NFKBIL1 HLA-DRA NEU1 PBX2 ABHD16A DDX39B-AS1 HCP5 GPSM3 PRRT1 HLA-DRB5 MICB LY6G6E C4B LOC100287329 C6orf47 LOC101929163 SNORA38 SNORD117 SAPCD1-AS1 C6orf25 NOTCH4 MSH5-SAPCD1 NELFE VARS LTB LTA HCG23 NCR3 HSPA1L CYP21A1P HCG26 MCCD1 HSPA1B AIF1 BTNL2 TNF LY6G5B LY6G5C MIR6721 TNXB DXO SLC44A4 PPT2-EGFL8 EGFL8 C2 RNF5 HSPA1A VWA7 DDX39B LY6G6F C6orf10
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss SNORD48 MIR6832 C4A BAG6 ZBTB12 CFB C6orf48 CLIC1 ATP6V1G2 EHMT2 MSH5 DDAH2 ATP6V1G2-DDX39B MIR4646 SKIV2L STK19 HLA-B LST1 C2-AS1 CSNK2B LSM2 APOM SNORD52 LY6G6D SNORD84 GPANK1 SAPCD1 TNXA PRRC2A LY6G6C CYP21A2 LOC102725068 MIR1236 NFKBIL1 NEU1 ABHD16A DDX39B-AS1 HCP5 MICB LY6G6E C4B LOC100287329 C6orf47 SNORA38 SNORD117 SAPCD1-AS1 C6orf25 MSH5-SAPCD1 NELFE VARS LTB LTA NCR3 HSPA1L CYP21A1P HCG26 MCCD1 HSPA1B AIF1 TNF LY6G5B LY6G5C TNXB DXO SLC44A4 MIR6891 C2 HSPA1A VWA7 DDX39B MICA LY6G6F
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion SYNGAP1 SNORD48 MIR6833 DAXX RXRB MIR6832 BAG6 CLIC1 HLA-DMB WDR46 AGER B3GALT4 ATP6V1G2-DDX39B HLA-DRB1 TAP1 COL11A2 MIR4646 TAP2 RPS18 SKIV2L STK19 LOC100507547 HLA-DQA1 CSNK2B PSMB8 RING1 MIR219A1 MIR3135B PPP1R2P1 GPANK1 AGPAT1 CYP21A2 LOC102725068 NFKBIL1 RGL2 HLA-DPA1 HLA-DQB1-AS1 PBX2 ABHD16A DDX39B-AS1 HCP5 PRRT1 PHF1 MICB LY6G6E PFDN6 C4B SNORD117 NOTCH4 HCG24 LTA HCG23 KIFC1 NCR3 CYP21A1P HCG26 ZBTB22 VPS52 MCCD1 HSPA1B TNF LY6G5B LY6G5C TNXB DXO HLA-DPB2 C2 DDX39B LY6G6F ATF6B HLA-DRB6 HCG25 HLA-DOA C4A MIR5004 ZBTB12 CFB C6orf48 ATP6V1G2 HLA-DMA SLC39A7 EHMT2 MSH5 BRD2 DDAH2 MIR6834 LOC100294145 LST1 ZBTB9 C2-AS1 HLA-DQA2 LSM2 HLA-DOB APOM HLA-DQB2 SNORD52 LY6G6D FKBPL SNORD84 SAPCD1 TNXA PRRC2A PPT2 LY6G6C MIR1236 PSMB8-AS1 HLA-DRA CUTA NEU1 HLA-DQB1 GPSM3 TAPBP HLA-DRB5 LOC100287329 C6orf47 LOC101929163 SNORA38 SAPCD1-AS1 C6orf25 MSH5-SAPCD1 NELFE VARS MIR6873 LTB HSPA1L AIF1 BTNL2 MIR6721 HSD17B8 SLC44A4 HLA-DPB1 PPT2-EGFL8 EGFL8 RNF5 HSPA1A PSMB9 VWA7 C6orf10
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion SYNGAP1 SNORD48 MIR6833 DAXX RXRB MIR6832 BAG6 CLIC1 HLA-DMB WDR46 AGER B3GALT4 ATP6V1G2-DDX39B HLA-DRB1 TAP1 COL11A2 MIR4646 TAP2 RPS18 SKIV2L STK19 LOC100507547 HLA-DQA1 CSNK2B PSMB8 RING1 MIR219A1 MIR3135B PPP1R2P1 GPANK1 AGPAT1 CYP21A2 LOC102725068 NFKBIL1 RGL2 HLA-DPA1 HLA-DQB1-AS1 PBX2 ABHD16A DDX39B-AS1 HCP5 PRRT1 PHF1 MICB LY6G6E PFDN6 C4B SNORD117 NOTCH4 HCG24 LTA HCG23 KIFC1 NCR3 CYP21A1P HCG26 ZBTB22 VPS52 MCCD1 HSPA1B TNF LY6G5B LY6G5C TNXB DXO HLA-DPB2 C2 DDX39B LY6G6F ATF6B HLA-DRB6 HCG25 HLA-DOA C4A MIR5004 ZBTB12 CFB C6orf48 ATP6V1G2 HLA-DMA SLC39A7 EHMT2 MSH5 BRD2 DDAH2 MIR6834 LOC100294145 LST1 ZBTB9 C2-AS1 HLA-DQA2 LSM2 HLA-DOB APOM HLA-DQB2 SNORD52 LY6G6D FKBPL SNORD84 SAPCD1 TNXA PRRC2A PPT2 LY6G6C MIR1236 PSMB8-AS1 HLA-DRA CUTA NEU1 HLA-DQB1 GPSM3 TAPBP HLA-DRB5 LOC100287329 C6orf47 LOC101929163 SNORA38 SAPCD1-AS1 C6orf25 MSH5-SAPCD1 NELFE VARS MIR6873 LTB HSPA1L AIF1 BTNL2 MIR6721 HSD17B8 SLC44A4 HLA-DPB1 PPT2-EGFL8 EGFL8 RNF5 HSPA1A PSMB9 VWA7 C6orf10
nsv830628 Chr.6:31919777 - 31979823 on Build GRCh38 Loss CFB DXO SKIV2L STK19 MIR1236 C2-AS1 C2 NELFE
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss ATF6B SNORD48 MIR6833 MIR6832 C4A BAG6 ZBTB12 CFB C6orf48 CLIC1 ATP6V1G2 EHMT2 MSH5 DDAH2 AGER ATP6V1G2-DDX39B MIR4646 SKIV2L STK19 LOC100507547 HLA-B LST1 C2-AS1 CSNK2B LSM2 APOM SNORD52 LY6G6D FKBPL SNORD84 GPANK1 SAPCD1 AGPAT1 TNXA PRRC2A PPT2 LY6G6C CYP21A2 LOC102725068 MIR1236 NFKBIL1 HLA-DRA NEU1 PBX2 ABHD16A DDX39B-AS1 HCP5 GPSM3 PRRT1 MICB LY6G6E C4B LOC100287329 C6orf47 LOC101929163 SNORA38 SNORD117 SAPCD1-AS1 C6orf25 NOTCH4 MSH5-SAPCD1 NELFE VARS LTB LTA HCG23 NCR3 HSPA1L CYP21A1P HCG26 MCCD1 HSPA1B AIF1 BTNL2 TNF LY6G5B LY6G5C MIR6721 TNXB DXO SLC44A4 PPT2-EGFL8 EGFL8 MIR6891 C2 RNF5 HSPA1A VWA7 DDX39B MICA LY6G6F C6orf10

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