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See other PHF1 CNV Assays ›
Gene Symbol
PHF1
Assay Reference Genome
Location

Chr.6:33413455 on build GRCh38
Cytoband
6p21.32
Assay ID Hs00671017_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 5252

Gene Name:

 PHD finger protein 1

Gene Aliases:

 MTF2L2, PCL1, PHF2, TDRD19C, hPHF1

Location:

 Chr.6:33410751-33416453 on Build GRCh38

Assay Gene Location:

 Within Exon 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PHF1 NM_002636.4 6 721 NP_002627.1
NM_024165.2 6 721 NP_077084.1
NR_027692.1 6 721
XM_011514662.1 6 638 XP_011512964.1
XM_011514663.1 6 638 XP_011512965.1
XM_011514664.1 6 638 XP_011512966.1
XM_011514665.1 6 638 XP_011512967.1
XM_011514666.1 6 638 XP_011512968.1
XM_011514669.1 6 638 XP_011512971.1
XM_011514670.2 6 638 XP_011512972.1
XM_017010939.1 5 433 XP_016866428.1
AF029678.1 6 541 AAC52062.1
AF052205.1 6 537 AAC13273.1
AK225913.1 6 545
AK295412.1 6 591
AK299162.1 3 220
AK316499.1 6 672
BC008834.2 6 689 AAH08834.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830637 Chr.6:33361588 - 33542927 on Build GRCh38 Loss KIFC1 MIR5004 PHF1 ZBTB9 SYNGAP1 CUTA
nsv830635 Chr.6:33270228 - 33446010 on Build GRCh38 Loss ZBTB22 MIR5004 MIR6834 PHF1 RGL2 SYNGAP1 WDR46 KIFC1 MIR6873 PFDN6 TAPBP RPS18 DAXX B3GALT4 CUTA VPS52
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion SAPCD1-AS1 C2-AS1 NELFE PSMB9 BAG6 HLA-DQB1-AS1 PBX2 MIR6832 SYNGAP1 LY6G6C HLA-DMB HLA-DRA PFDN6 MIR6721 ZBTB9 STK19 CYP21A2 HLA-DRB5 LOC100287329 MSH5 PPP1R2P1 RGL2 ATF6B HCG23 KIFC1 RING1 MCCD1 BRD2 LY6G5B MSH5-SAPCD1 C6orf48 HCG24 APOM HLA-DQB1 C6orf10 HLA-DQA2 B3GALT4 HLA-DOB HLA-DMA HLA-DRB1 LY6G6D CYP21A1P LY6G6E C4B HLA-DPB1 AIF1 NEU1 CLIC1 PSMB8-AS1 GPANK1 C4A LOC101929163 LY6G5C HLA-DQB2 MIR219A1 HCG25 HCP5 NOTCH4 AGPAT1 HLA-DRB6 MICB LOC100507547 PHF1 PSMB8 VARS WDR46 SNORA38 SKIV2L HSD17B8 TAP1 COL11A2 MIR6873 LTA RPS18 PRRT1 HCG26 ATP6V1G2 HSPA1A PPT2 GPSM3 DXO LOC102725068 SLC39A7 TNF C6orf25 C2 SLC44A4 NFKBIL1 LST1 ZBTB12 EGFL8 NCR3 MIR6833 MIR3135B TAP2 VWA7 MIR1236 DDX39B LY6G6F PPT2-EGFL8 CSNK2B TNXA RNF5 MIR4646 DDX39B-AS1 SNORD84 TAPBP HLA-DQA1 HLA-DPA1 ZBTB22 SAPCD1 CFB LSM2 HLA-DOA HLA-DPB2 RXRB HSPA1B PRRC2A EHMT2 DAXX TNXB SNORD52 MIR5004 MIR6834 ATP6V1G2-DDX39B HSPA1L DDAH2 BTNL2 ABHD16A SNORD48 LOC100294145 LTB SNORD117 FKBPL CUTA C6orf47 VPS52 AGER
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion SAPCD1-AS1 C2-AS1 NELFE PSMB9 BAG6 HLA-DQB1-AS1 PBX2 MIR6832 SYNGAP1 LY6G6C HLA-DMB HLA-DRA PFDN6 MIR6721 ZBTB9 STK19 CYP21A2 HLA-DRB5 LOC100287329 MSH5 PPP1R2P1 RGL2 ATF6B HCG23 KIFC1 RING1 MCCD1 BRD2 LY6G5B MSH5-SAPCD1 C6orf48 HCG24 APOM HLA-DQB1 C6orf10 HLA-DQA2 B3GALT4 HLA-DOB HLA-DMA HLA-DRB1 LY6G6D CYP21A1P LY6G6E C4B HLA-DPB1 AIF1 NEU1 CLIC1 PSMB8-AS1 GPANK1 C4A LOC101929163 LY6G5C HLA-DQB2 MIR219A1 HCG25 HCP5 NOTCH4 AGPAT1 HLA-DRB6 MICB LOC100507547 PHF1 PSMB8 VARS WDR46 SNORA38 SKIV2L HSD17B8 TAP1 COL11A2 MIR6873 LTA RPS18 PRRT1 HCG26 ATP6V1G2 HSPA1A PPT2 GPSM3 DXO LOC102725068 SLC39A7 TNF C6orf25 C2 SLC44A4 NFKBIL1 LST1 ZBTB12 EGFL8 NCR3 MIR6833 MIR3135B TAP2 VWA7 MIR1236 DDX39B LY6G6F PPT2-EGFL8 CSNK2B TNXA RNF5 MIR4646 DDX39B-AS1 SNORD84 TAPBP HLA-DQA1 HLA-DPA1 ZBTB22 SAPCD1 CFB LSM2 HLA-DOA HLA-DPB2 RXRB HSPA1B PRRC2A EHMT2 DAXX TNXB SNORD52 MIR5004 MIR6834 ATP6V1G2-DDX39B HSPA1L DDAH2 BTNL2 ABHD16A SNORD48 LOC100294145 LTB SNORD117 FKBPL CUTA C6orf47 VPS52 AGER
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion ZBTB22 HLA-DMA PSMB9 HLA-DOA HLA-DPB1 HLA-DPB2 HLA-DQB1-AS1 RXRB SLC39A7 SYNGAP1 PSMB8-AS1 HLA-DMB PFDN6 ZBTB9 DAXX HLA-DQB2 MIR219A1 HCG25 MIR5004 MIR6834 MIR3135B PHF1 TAP2 PPP1R2P1 RGL2 PSMB8 LOC100294145 WDR46 KIFC1 RING1 BRD2 HSD17B8 TAP1 COL11A2 HCG24 MIR6873 TAPBP HLA-DQA1 RPS18 HLA-DQB1 HLA-DQA2 HLA-DPA1 B3GALT4 CUTA HLA-DOB VPS52

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