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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2177470 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00680548_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 20
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 20 5408 NP_065815.1
AB037727.1 12 4545 BAA92544.1
AF451977.1 20 5474 AAL49758.1

Target Gene Details

Entrez Gene ID:

 84231

Gene Name:

 TNF receptor associated factor 7

Gene Aliases:

 RFWD1, RNF119

Location:

 Chr.16:2155752-2178129 on Build GRCh38

Assay Gene Location:

 Within Exon 21
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRAF7 NM_032271.2 21 3008 NP_115647.2
XM_005255627.4 21 3048 XP_005255684.1
XM_011522700.1 21 3050 XP_011521002.1
AL136921.1 20 2904 CAB66855.1
AY569455.1 20 2961 AAS68363.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication DNASE1L2 SNORD60 ARHGDIG NPRL3 CRAMP1 C16orf91 ABCA3 UBE2I MIR1225 SNHG19 CACNA1H SNRNP25 SSTR5 MIR3177 MIR4516 C1QTNF8 PRSS27 SNORA78 MIR3176 PRR25 PRR35 BAIAP3 HS3ST6 CAPN15 PKD1 HAGH RPS2 MSRB1 MLST8 AMDHD2 LOC105371049 MRPS34 NTN3 SNORA64 CHTF18 TSC2 RGS11 KCTD5 LOC105371038 PRSS29P TPSB2 SNHG9 LOC105371046 MPG MAPK8IP3 DECR2 E4F1 LMF1-AS1 TPSAB1 PGP C16orf59 GNPTG BRICD5 DDX11L10 LOC729652 TBC1D24 MIR4717 WASIR2 TPSG1 MIR6768 RPL23AP5 MIR5587 UNKL NPW PTX4 LOC100134368 LOC101929280 MIR662 SNORA10 GNG13 CCDC78 RHOT2 MIR6767 RPUSD1 POLR3K MEIOB MSLN TMEM204 ZNF598 EME2 GFER SLC9A3R2 PDPK1 LOC105371184 CEMP1 ECI1 MCRIP2 FAM234A WDR24 PDIA2 METRN MIR6859-4 TPSD1 NDUFB10 LOC106660606 HBQ1 TRAF7 METTL26 LOC100287175 RAB11FIP3 NOXO1 TBL3 RAB40C LOC105371047 RHBDL1 LOC105371045 LMF1 WDR90 ABCA17P NARFL MIR3178 ATP6V0C CLCN7 IGFALS MIR3677 LINC00235 FLJ42627 NTHL1 SOX8 JMJD8 HBM MRPL28 HBA2 TMEM8A TELO2 HAGHL ERVK13-1 NME3 CASKIN1 TSR3 AXIN1 IFT140 FBXL16 RNF151 CCNF RHBDF1 FAM173A SSTR5-AS1 HBA1 LUC7L MIR3180-5 LOC107987233 HBZ RNPS1 MIR940 NME4 CCDC154 LOC107984876 LOC652276 NUBP2 SPSB3 MIR6511B1 STUB1 HN1L PIGQ RAB26 NHLRC4 LINC00254 FAHD1 WFIKKN1 RPL3L SYNGR3
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss DNASE1L2 NTHL1 SNORD60 GFER SLC9A3R2 CASKIN1 E4F1 PGP ECI1 BRICD5 MIR1225 SNHG19 MIR4516 MIR3180-5 RNPS1 NPW TRAF7 NOXO1 TBL3 PKD1 MIR6511B1 MLST8 RAB26 LOC105371049 SYNGR3 TSC2 ZNF598
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss DNASE1L2 SNORD60 TRAF7 PKD1 CASKIN1 E4F1 MIR6511B1 PGP ECI1 BRICD5 MLST8 RAB26 MIR1225 SNHG19 LOC105371049 MIR4516 MIR3180-5 TSC2
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss DNASE1L2 RNPS1 MIR940 SNORD60 TRAF7 CASKIN1 E4F1 PGP ECI1 BRICD5 MLST8 RAB26 SNHG19 MIR3677 LOC106660606
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss SNORD60 RAB26 TRAF7 MIR1225 SNHG19 LOC105371049 MIR4516 PKD1 CASKIN1 MIR3180-5 MIR6511B1 TSC2
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain TRAF7 CASKIN1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain DNASE1L2 SNORD60 PDPK1 CASKIN1 E4F1 PGP CEMP1 ECI1 C16orf59 ABCA3 BRICD5 MIR1225 CCNF SNHG19 LOC729652 TBC1D24 MIR4717 MIR4516 MIR6768 LOC106660606 MIR3180-5 RNPS1 MIR940 TRAF7 LOC652276 PKD1 MIR6511B1 MIR6767 ABCA17P MLST8 MIR3178 RAB26 ATP6V0C AMDHD2 LOC105371049 MIR3677 NTN3 TSC2
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss DNASE1L2 RNPS1 MIR940 ECI1 BRICD5 MLST8 TRAF7 MIR3677 CASKIN1 LOC106660606 E4F1 PGP
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion DNASE1L2 RNPS1 MIR940 SNORD60 TRAF7 CASKIN1 E4F1 PGP ECI1 ABCA3 BRICD5 MLST8 RAB26 SNHG19 MIR4717 MIR3677 LOC106660606

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