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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2177470 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00680548_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 20
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 20 5408 NP_065815.1
AB037727.1 12 4545 BAA92544.1
AF451977.1 20 5474 AAL49758.1

Target Gene Details

Entrez Gene ID:

 84231

Gene Name:

 TNF receptor associated factor 7

Gene Aliases:

 RFWD1, RNF119

Location:

 Chr.16:2155752-2178129 on Build GRCh38

Assay Gene Location:

 Within Exon 21
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRAF7 NM_032271.2 21 3008 NP_115647.2
XM_005255627.4 21 3048 XP_005255684.1
XM_011522700.1 21 3050 XP_011521002.1
AL136921.1 20 2904 CAB66855.1
AY569455.1 20 2961 AAS68363.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MSLN RPL23AP5 ATP6V0C PRSS27 MSRB1 MIR1225 ARHGDIG PKD1 FAHD1 ZNF598 LUC7L PDPK1 TMEM204 PDIA2 NDUFB10 PGP RAB26 HBA1 TPSG1 STUB1 CCDC78 CHTF18 SPSB3 IFT140 TPSD1 MAPK8IP3 RNPS1 LOC101929280 TPSB2 CASKIN1 NPW POLR3K MRPL28 WDR24 METRN SNHG9 LOC105371047 WDR90 LINC00235 LOC107987233 MIR3178 TBC1D24 LINC00254 LOC105371046 MIR662 CAPN15 MIR5587 SSTR5-AS1 PIGQ RPS2 HBA2 RNF151 MEIOB RGS11 MIR6859-4 LOC105371184 HN1L PTX4 C1QTNF8 RHBDF1 CLCN7 RPUSD1 SNORA78 HAGHL BAIAP3 GFER RHBDL1 E4F1 DNASE1L2 UNKL JMJD8 HBQ1 MIR4516 AXIN1 METTL26 RHOT2 AMDHD2 WFIKKN1 NHLRC4 UBE2I LOC105371038 NUBP2 CACNA1H NME4 HBZ LOC106660606 RAB40C MIR3677 FBXL16 MCRIP2 LMF1-AS1 WASIR2 NTHL1 HAGH MIR3180-5 EME2 LOC107984876 NOXO1 SOX8 TSR3 TRAF7 CCNF FLJ42627 GNG13 ERVK13-1 FAM234A TMEM8A SNORD60 TSC2 SNORA64 LOC100287175 NME3 HS3ST6 MIR3176 MRPS34 TPSAB1 MIR4717 PRR35 LOC105371049 LOC100134368 PRSS29P TBL3 MIR6767 RAB11FIP3 SLC9A3R2 NPRL3 SNRNP25 DECR2 SSTR5 MLST8 NARFL ECI1 IGFALS C16orf59 LOC729652 GNPTG SYNGR3 ABCA3 MIR6511B1 MPG SNHG19 DDX11L10 CCDC154 LMF1 MIR3177 BRICD5 TELO2 RPL3L HBM PRR25 KCTD5 FAM173A C16orf91 CEMP1 MIR6768 SNORA10 NTN3 LOC105371045 LOC652276 MIR940 ABCA17P CRAMP1
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss TBL3 MIR1225 PKD1 SLC9A3R2 ZNF598 LOC106660606 MIR3677 MLST8 ECI1 SYNGR3 NTHL1 ABCA3 MIR6511B1 PGP RAB26 MIR3180-5 SNHG19 NOXO1 TRAF7 BRICD5 RNPS1 GFER E4F1 CASKIN1 SNORD60 TSC2 NPW DNASE1L2 MIR4717 LOC105371049 MIR940 MIR4516
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss TRAF7 BRICD5 MIR1225 PKD1 E4F1 MLST8 CASKIN1 SNORD60 TSC2 ECI1 DNASE1L2 MIR6511B1 PGP RAB26 MIR3180-5 LOC105371049 SNHG19 MIR4516
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss TRAF7 BRICD5 RNPS1 LOC106660606 E4F1 MIR3677 MLST8 CASKIN1 SNORD60 ECI1 DNASE1L2 PGP RAB26 SNHG19 MIR940
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss TSC2 TRAF7 MIR1225 PKD1 MIR6511B1 RAB26 MIR3180-5 LOC105371049 SNHG19 MIR4516 CASKIN1 SNORD60
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain TRAF7 CASKIN1
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss ECI1 TRAF7 DNASE1L2 BRICD5 PGP RNPS1 MIR940 LOC106660606 E4F1 MIR3677 MLST8 CASKIN1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain AMDHD2 ATP6V0C MIR6767 MIR3178 MIR1225 TBC1D24 PKD1 PDPK1 LOC106660606 MIR3677 MLST8 ECI1 C16orf59 LOC729652 ABCA3 MIR6511B1 PGP RAB26 MIR3180-5 SNHG19 TRAF7 CCNF BRICD5 RNPS1 E4F1 CASKIN1 SNORD60 TSC2 CEMP1 DNASE1L2 MIR6768 NTN3 LOC652276 MIR4717 LOC105371049 MIR940 MIR4516 ABCA17P
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion TRAF7 BRICD5 RNPS1 LOC106660606 E4F1 MIR3677 MLST8 CASKIN1 SNORD60 ECI1 DNASE1L2 ABCA3 PGP RAB26 MIR4717 SNHG19 MIR940

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