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See other NELFE CNV Assays ›
Gene Symbol
NELFE
Assay Reference Genome
Location

Chr.6:31954102 on build GRCh38
Cytoband
6p21.33
Assay ID Hs00688359_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 7936

Gene Name:

 negative elongation factor complex member E

Gene Aliases:

 D6S45, NELF-E, RD, RDBP, RDP

Location:

 Chr.6:31952087-31959087 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 8 - Intron 9
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
NELFE NM_002904.5 NP_002895.3
XM_006715205.3 XP_006715268.1
XM_011514913.2 XP_011513215.1
XM_017011299.1 XP_016866788.1
AK300717.1
AK300898.1
AK302652.1
AK303152.1
BC025235.1 AAH25235.1
BC050617.2 AAH50617.1
JQ313904.1
L03411.1 AAC37523.1
X16105.1 CAA34231.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss C2-AS1 ATF6B C4B PRRT1 TNXB HCG23 MIR6833 AGPAT1 STK19 HLA-DRA FKBPL HLA-DRB5 C6orf10 GPSM3 MIR6721 EGFL8 RNF5 AGER ZBTB12 LOC100507547 HLA-DQA1 PPT2-EGFL8 HSPA1A PBX2 SNORD48 MIR1236 HLA-DQB1-AS1 HSPA1B CYP21A2 NOTCH4 CYP21A1P NELFE TNXA HLA-DQB1 SLC44A4 CFB NEU1 EHMT2 HLA-DRB6 C4A C2 LOC101929163 HLA-DRB1 DXO SNORD52 SKIV2L BTNL2 C6orf48 PPT2
nsv428141 Chr.6:31903735 - 32125066 on Build GRCh38 Gain+Loss C2-AS1 C4A ATF6B C4B C2 TNXB MIR1236 DXO CYP21A2 CYP21A1P SKIV2L NELFE TNXA STK19 CFB
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion HSPA1L C2-AS1 ATF6B C4B NFKBIL1 PRRT1 TNXB HCG23 MCCD1 MIR6833 AGPAT1 AIF1 DDAH2 VARS HCP5 SAPCD1-AS1 LSM2 CSNK2B STK19 HCG26 HLA-DRA DDX39B ATP6V1G2 FKBPL LY6G5C SNORA38 HLA-DRB5 LY6G6E GPANK1 ATP6V1G2-DDX39B LTA C6orf10 LOC102725068 LY6G6D GPSM3 APOM MIR6721 EGFL8 RNF5 LOC100287329 AGER ZBTB12 VWA7 LOC100507547 PRRC2A PPT2-EGFL8 HSPA1A PBX2 SNORD48 C6orf25 MIR1236 HSPA1B ABHD16A CYP21A2 NOTCH4 SNORD84 CYP21A1P LTB NELFE MIR4646 TNXA LY6G6F LST1 MSH5-SAPCD1 SLC44A4 C6orf47 CFB NEU1 EHMT2 HLA-DRB6 MIR6832 C4A MICB C2 SAPCD1 LOC101929163 CLIC1 HLA-DRB1 DXO MSH5 SNORD52 SKIV2L NCR3 LY6G6C DDX39B-AS1 BTNL2 SNORD117 C6orf48 TNF BAG6 PPT2 LY6G5B
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss HSPA1L C2-AS1 C4B NFKBIL1 TNXB MCCD1 AIF1 DDAH2 VARS HCP5 SAPCD1-AS1 LSM2 CSNK2B STK19 HCG26 DDX39B ATP6V1G2 LY6G5C SNORA38 LY6G6E GPANK1 ATP6V1G2-DDX39B LTA LOC102725068 LY6G6D APOM LOC100287329 ZBTB12 VWA7 PRRC2A HSPA1A SNORD48 C6orf25 MIR1236 HSPA1B ABHD16A CYP21A2 SNORD84 CYP21A1P LTB NELFE MIR4646 TNXA LY6G6F LST1 MSH5-SAPCD1 SLC44A4 C6orf47 CFB NEU1 EHMT2 MIR6832 C4A MICB C2 SAPCD1 CLIC1 MIR6891 DXO MSH5 SNORD52 SKIV2L NCR3 MICA LY6G6C DDX39B-AS1 HLA-B SNORD117 C6orf48 TNF BAG6 LY6G5B
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion C4B MIR6833 AIF1 DDAH2 VARS LSM2 LOC100294145 ZBTB22 DDX39B ATP6V1G2 FKBPL SNORA38 ATP6V1G2-DDX39B C6orf10 LY6G6D GPSM3 APOM COL11A2 EGFL8 RNF5 HLA-DQB2 ZBTB12 PPT2-EGFL8 HLA-DPA1 HLA-DPB1 TAP2 SNORD48 C6orf25 BRD2 HSPA1B CYP21A2 SNORD84 CYP21A1P TAP1 LTB MIR4646 SYNGAP1 LST1 MSH5-SAPCD1 WDR46 CFB RXRB NEU1 PSMB8 MIR6832 MICB C2 SAPCD1 LOC101929163 CLIC1 DXO SNORD52 SKIV2L NCR3 HLA-DMA VPS52 MIR6873 DDX39B-AS1 B3GALT4 SNORD117 MIR6834 DAXX BAG6 HSPA1L C2-AS1 ATF6B NFKBIL1 PRRT1 HLA-DQA2 TNXB HCG23 MCCD1 AGPAT1 HCP5 MIR5004 SAPCD1-AS1 CSNK2B STK19 CUTA HCG26 RING1 HLA-DRA RGL2 LY6G5C HLA-DRB5 LY6G6E KIFC1 GPANK1 LTA LOC102725068 PSMB8-AS1 MIR6721 LOC100287329 HSD17B8 AGER VWA7 MIR219A1 LOC100507547 HLA-DQA1 PRRC2A HSPA1A PBX2 HCG24 MIR1236 HLA-DQB1-AS1 PHF1 ABHD16A PFDN6 HCG25 NOTCH4 PPP1R2P1 NELFE TNXA LY6G6F HLA-DQB1 SLC39A7 SLC44A4 C6orf47 HLA-DOA HLA-DMB EHMT2 ZBTB9 HLA-DRB6 C4A HLA-DPB2 PSMB9 RPS18 TAPBP HLA-DRB1 MSH5 LY6G6C HLA-DOB BTNL2 MIR3135B C6orf48 TNF PPT2 LY6G5B
nsv830628 Chr.6:31919777 - 31979823 on Build GRCh38 Loss NELFE C2-AS1 C2 STK19 MIR1236 CFB DXO SKIV2L
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion C4B MIR6833 AIF1 DDAH2 VARS LSM2 LOC100294145 ZBTB22 DDX39B ATP6V1G2 FKBPL SNORA38 ATP6V1G2-DDX39B C6orf10 LY6G6D GPSM3 APOM COL11A2 EGFL8 RNF5 HLA-DQB2 ZBTB12 PPT2-EGFL8 HLA-DPA1 HLA-DPB1 TAP2 SNORD48 C6orf25 BRD2 HSPA1B CYP21A2 SNORD84 CYP21A1P TAP1 LTB MIR4646 SYNGAP1 LST1 MSH5-SAPCD1 WDR46 CFB RXRB NEU1 PSMB8 MIR6832 MICB C2 SAPCD1 LOC101929163 CLIC1 DXO SNORD52 SKIV2L NCR3 HLA-DMA VPS52 MIR6873 DDX39B-AS1 B3GALT4 SNORD117 MIR6834 DAXX BAG6 HSPA1L C2-AS1 ATF6B NFKBIL1 PRRT1 HLA-DQA2 TNXB HCG23 MCCD1 AGPAT1 HCP5 MIR5004 SAPCD1-AS1 CSNK2B STK19 CUTA HCG26 RING1 HLA-DRA RGL2 LY6G5C HLA-DRB5 LY6G6E KIFC1 GPANK1 LTA LOC102725068 PSMB8-AS1 MIR6721 LOC100287329 HSD17B8 AGER VWA7 MIR219A1 LOC100507547 HLA-DQA1 PRRC2A HSPA1A PBX2 HCG24 MIR1236 HLA-DQB1-AS1 PHF1 ABHD16A PFDN6 HCG25 NOTCH4 PPP1R2P1 NELFE TNXA LY6G6F HLA-DQB1 SLC39A7 SLC44A4 C6orf47 HLA-DOA HLA-DMB EHMT2 ZBTB9 HLA-DRB6 C4A HLA-DPB2 PSMB9 RPS18 TAPBP HLA-DRB1 MSH5 LY6G6C HLA-DOB BTNL2 MIR3135B C6orf48 TNF PPT2 LY6G5B
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss HSPA1L C2-AS1 ATF6B C4B NFKBIL1 PRRT1 TNXB HCG23 MCCD1 MIR6833 AGPAT1 AIF1 DDAH2 VARS HCP5 SAPCD1-AS1 LSM2 CSNK2B STK19 HCG26 HLA-DRA DDX39B ATP6V1G2 FKBPL LY6G5C SNORA38 LY6G6E GPANK1 ATP6V1G2-DDX39B LTA C6orf10 LOC102725068 LY6G6D GPSM3 APOM MIR6721 EGFL8 RNF5 LOC100287329 AGER ZBTB12 VWA7 LOC100507547 PRRC2A PPT2-EGFL8 HSPA1A PBX2 SNORD48 C6orf25 MIR1236 HSPA1B ABHD16A CYP21A2 NOTCH4 SNORD84 CYP21A1P LTB NELFE MIR4646 TNXA LY6G6F LST1 MSH5-SAPCD1 SLC44A4 C6orf47 CFB NEU1 EHMT2 MIR6832 C4A MICB C2 SAPCD1 LOC101929163 CLIC1 MIR6891 DXO MSH5 SNORD52 SKIV2L NCR3 MICA LY6G6C DDX39B-AS1 BTNL2 HLA-B SNORD117 C6orf48 TNF BAG6 PPT2 LY6G5B

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