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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2180719 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00688406_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 18 2681 NP_065815.1
AB037727.1 10 1818 BAA92544.1
AF451977.1 18 2747 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication SSTR5-AS1 LINC00235 CCDC78 MIR662 CRAMP1 LINC00254 MAPK8IP3 FLJ42627 CACNA1H TSR3 WFIKKN1 PIGQ RHOT2 HN1L MIR6859-4 LOC729652 NPW RAB11FIP3 E4F1 METTL26 MRPS34 PRR25 MCRIP2 PRSS29P HAGHL IGFALS TPSB2 TPSD1 SNHG19 SSTR5 MIR940 SLC9A3R2 MLST8 SNRNP25 MIR3176 MSLN LOC105371049 SNORA78 LOC105371046 RHBDF1 C16orf59 TSC2 MRPL28 PGP EME2 LOC100287175 MIR6511B1 ARHGDIG MIR3677 NME4 MIR4516 ZNF598 MIR5587 JMJD8 MIR1225 CHTF18 NDUFB10 RPS2 ECI1 AXIN1 SOX8 DNASE1L2 LUC7L BRICD5 ABCA17P NPRL3 WDR90 CCDC154 HBA2 PTX4 TRAF7 METRN FAHD1 RAB26 LMF1-AS1 MIR4717 GNG13 PDIA2 RPL3L LOC105371184 NTN3 FBXL16 TBC1D24 MIR3177 PDPK1 NARFL LOC101929280 SNORA10 RHBDL1 TELO2 HBZ MIR6768 LOC105371038 WDR24 LOC652276 HBA1 LOC107987233 KCTD5 RPUSD1 HBM RGS11 MIR6767 PRR35 HBQ1 IFT140 WASIR2 SPSB3 TPSG1 NHLRC4 NTHL1 STUB1 DDX11L10 LMF1 FAM234A LOC107984876 LOC105371047 CASKIN1 NUBP2 GFER MEIOB C16orf91 C1QTNF8 PRSS27 ABCA3 SNORA64 HS3ST6 BAIAP3 SNORD60 RNF151 NME3 SYNGR3 POLR3K CAPN15 LOC106660606 UNKL CLCN7 AMDHD2 MSRB1 RAB40C UBE2I ATP6V0C TMEM8A FAM173A MIR3180-5 TMEM204 LOC105371045 GNPTG ERVK13-1 DECR2 CEMP1 MIR3178 SNHG9 RPL23AP5 MPG TPSAB1 LOC100134368 CCNF PKD1 NOXO1 HAGH TBL3 RNPS1
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss LOC105371049 GFER TSC2 PGP MIR6511B1 SNORD60 MIR4516 ZNF598 MIR1225 SYNGR3 ECI1 DNASE1L2 NPW BRICD5 MIR3180-5 E4F1 TRAF7 RAB26 NTHL1 PKD1 SNHG19 NOXO1 TBL3 SLC9A3R2 MLST8 RNPS1 CASKIN1
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss MIR3180-5 LOC105371049 E4F1 TSC2 PGP TRAF7 RAB26 MIR6511B1 SNORD60 MIR4516 MIR1225 PKD1 ECI1 SNHG19 MLST8 DNASE1L2 BRICD5 CASKIN1
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss E4F1 PGP TRAF7 RAB26 MIR3677 SNORD60 LOC106660606 ECI1 SNHG19 MIR940 MLST8 DNASE1L2 RNPS1 BRICD5 CASKIN1
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR4516 MIR3180-5 LOC105371049 MIR1225 TSC2 PKD1 TRAF7 SNHG19 RAB26 MIR6511B1 SNORD60 CASKIN1
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain TRAF7 CASKIN1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain LOC105371049 C16orf59 TSC2 PGP ABCA3 MIR6511B1 MIR3677 MIR6768 SNORD60 MIR4516 LOC652276 MIR1225 LOC106660606 ECI1 AMDHD2 LOC729652 DNASE1L2 BRICD5 ATP6V0C MIR3180-5 MIR6767 ABCA17P E4F1 TRAF7 RAB26 CEMP1 MIR3178 MIR4717 NTN3 CCNF PKD1 TBC1D24 SNHG19 PDPK1 MIR940 MLST8 RNPS1 CASKIN1
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss E4F1 PGP TRAF7 LOC106660606 ECI1 MIR940 MIR3677 MLST8 DNASE1L2 RNPS1 BRICD5 CASKIN1
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion E4F1 PGP TRAF7 ABCA3 RAB26 MIR4717 MIR3677 SNORD60 LOC106660606 ECI1 SNHG19 MIR940 MLST8 DNASE1L2 RNPS1 BRICD5 CASKIN1

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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