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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2180719 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00688406_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 18 2681 NP_065815.1
AB037727.1 10 1818 BAA92544.1
AF451977.1 18 2747 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LINC00254 BAIAP3 LOC107984876 NUBP2 PDPK1 HBQ1 PIGQ RHBDL1 LOC105371045 LOC107987233 SNORA78 CLCN7 SNORA10 RHBDF1 LOC105371184 RGS11 NDUFB10 MAPK8IP3 GNG13 HBA2 MIR6859-4 WDR24 ECI1 BRICD5 MIR940 GFER RAB11FIP3 CCNF MRPL28 UBE2I TBC1D24 FAHD1 KCTD5 RNPS1 MIR4516 SNORA64 DECR2 C1QTNF8 MSRB1 ABCA17P TSC2 LOC105371046 LINC00235 PTX4 LOC105371049 HAGH TELO2 PRSS29P MIR4717 TPSD1 WASIR2 PRR35 TPSG1 CCDC154 LOC105371047 TRAF7 MPG WDR90 LUC7L PGP CRAMP1 DNASE1L2 MIR5587 RNF151 HAGHL MIR6767 NPW FLJ42627 RHOT2 SNRNP25 ARHGDIG SLC9A3R2 MIR3176 SYNGR3 RPUSD1 CHTF18 FBXL16 ZNF598 C16orf59 ABCA3 MEIOB ATP6V0C MSLN DDX11L10 MIR3177 NME3 MIR6768 CAPN15 PRSS27 POLR3K PKD1 STUB1 RPL3L PRR25 NARFL LOC101929280 RPL23AP5 E4F1 HBA1 NOXO1 LOC100287175 CEMP1 NHLRC4 ERVK13-1 IGFALS SSTR5 IFT140 SNORD60 TMEM8A TSR3 C16orf91 EME2 SOX8 LMF1 CASKIN1 TMEM204 TBL3 LMF1-AS1 HBZ SPSB3 UNKL HBM MIR662 METTL26 NTHL1 LOC100134368 SSTR5-AS1 CCDC78 LOC106660606 SNHG9 SNHG19 TPSB2 GNPTG LOC105371038 FAM173A MIR3180-5 MRPS34 JMJD8 MCRIP2 RAB40C METRN CACNA1H RAB26 RPS2 MIR1225 PDIA2 HS3ST6 NTN3 FAM234A NME4 MIR3178 LOC652276 LOC729652 WFIKKN1 AMDHD2 MLST8 TPSAB1 AXIN1 NPRL3 MIR6511B1 MIR3677 HN1L
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss TRAF7 PKD1 LOC106660606 PGP SNHG19 E4F1 DNASE1L2 MIR3180-5 NOXO1 NPW SNORD60 ECI1 BRICD5 SLC9A3R2 MIR940 GFER SYNGR3 RAB26 MIR1225 CASKIN1 RNPS1 TBL3 MIR4516 ZNF598 ABCA3 MLST8 TSC2 NTHL1 LOC105371049 MIR6511B1 MIR4717 MIR3677
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss RAB26 TRAF7 PKD1 MIR1225 CASKIN1 PGP MIR4516 SNHG19 E4F1 DNASE1L2 MIR3180-5 MLST8 TSC2 LOC105371049 SNORD60 MIR6511B1 ECI1 BRICD5
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss RAB26 TRAF7 CASKIN1 LOC106660606 PGP RNPS1 SNHG19 E4F1 DNASE1L2 MLST8 SNORD60 ECI1 MIR3677 BRICD5 MIR940
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR3180-5 RAB26 TSC2 TRAF7 PKD1 MIR1225 LOC105371049 CASKIN1 MIR4516 SNORD60 MIR6511B1 SNHG19
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain TRAF7 CASKIN1
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss E4F1 DNASE1L2 MLST8 TRAF7 CASKIN1 LOC106660606 PGP RNPS1 ECI1 MIR3677 BRICD5 MIR940
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain PDPK1 TRAF7 PKD1 LOC106660606 PGP SNHG19 E4F1 DNASE1L2 MIR3180-5 CEMP1 MIR6767 SNORD60 ECI1 BRICD5 MIR940 CCNF RAB26 MIR1225 TBC1D24 CASKIN1 RNPS1 MIR4516 NTN3 C16orf59 ABCA3 MIR3178 LOC652276 ATP6V0C LOC729652 AMDHD2 ABCA17P MLST8 TSC2 LOC105371049 MIR6768 MIR6511B1 MIR4717 MIR3677
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion RAB26 TRAF7 CASKIN1 LOC106660606 PGP RNPS1 SNHG19 ABCA3 E4F1 DNASE1L2 MLST8 SNORD60 ECI1 MIR4717 MIR3677 BRICD5 MIR940

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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