Hs00700705_cn

• Gene Symbol: BDNF
• Assay Reference Genome Location: Chr.11:27655961 on build GRCh38
• Cytoband: 11p14.1

Target Gene Details

• Entrez Gene ID: 627
• Gene Name: brain derived neurotrophic factor
• Gene Aliases: ANON2, BULN2
• Location: Chr.11:27654893-27722058 on Build GRCh38
• Assay Gene Location: Within Exon 11

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
BDNF	NM_001143805.1	2	2761	NP_001137277.1
	NM_001143806.1	2	2976	NP_001137278.1
	NM_001143807.1	2	2862	NP_001137279.1
	NM_001143808.1	2	2698	NP_001137280.1
	NM_001143809.1	2	2708	NP_001137281.1
	NM_001143810.1	3	2991	NP_001137282.1
	NM_001143811.1	4	3108	NP_001137283.1
	NM_001143812.1	2	2850	NP_001137284.1
	NM_001143813.1	2	2932	NP_001137285.1
	NM_001143814.1	3	3057	NP_001137286.1
	NM_001143816.1	2	3455	NP_001137288.1
	NM_001709.4	2	2950	NP_001700.2
	NM_170731.4	2	3272	NP_733927.1
	NM_170732.4	2	3059	NP_733928.1
	NM_170733.3	2	2962	NP_733929.1
	NM_170734.3	2	2910	NP_733930.1
	NM_170735.5	1	3689	NP_733931.1
	XM_011520280.2	2	3856	XP_011518582.1
	AY054392.2	2	2963	AAL23557.2
	AY054393.2	2	2705	AAL23558.1
	AY054394.2	2	2920	AAL23559.1
	AY054395.2	2	3003	AAL23560.1
	AY054396.2	2	2761	AAL23561.1
	AY054397.2	2	2844	AAL23562.1
	AY054398.2	2	2891	AAL23563.1
	AY054399.2	3	2776	AAL23564.1
	AY054400.2	2	2877	AAL23565.2
	EF674517.1	2	2761
	EF674518.1	2	2976
	EF674519.1	2	3059
	EF674520.1	2	2862
	EF674521.1	2	2962
	EF689009.1	1	3703
	EF689010.1	2	3469
	EF689011.1	2	2698
	EF689012.1	2	2708
	EF689013.1	2	2850
	EF689014.1	2	2932
	EF689015.1	2	2950
	EF689016.1	3	3057
	EF689017.1	3	2809
	EF689018.1	2	2910
	EF689019.1	3	2991
	EF689020.1	4	3108
	EF689021.1	2	3272

Target Gene Details

• Entrez Gene ID: 497258
• Gene Name: BDNF antisense RNA
• Gene Aliases: ANTI-BDNF, BDNF, BDNF-AS1, BDNFOS, NCRNA00049
• Location: Chr.11:27506852-27698171 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
BDNF-AS	NR_002832.2
	NR_033312.1
	NR_033313.1
	NR_033314.1
	NR_033315.1
	AY054391.4
	AY054401.3
	AY054402.3
	AY054403.4
	AY054404.4
	AY054405.4
	AY513486.3
	EF689022.1
	EF689023.1
	EF689024.1
	EF689025.1
	EF689026.1
	EF689027.1
	EF689028.1
	EF689029.1
	EF689030.1
	EF689031.1
	EF689032.1
	EF689033.1
	EF689034.1
	EF689035.1
	EF689036.1
	EF689037.1
	EF689038.1
	EF689039.1
	EF689040.1
	EF689041.1
	EF689042.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv832095	Chr.11:27517079 - 27694192 on Build GRCh38	Gain	BDNF LINC00678 BDNF-AS

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

neurotrophic factor

Gene Ontology Categories:

Process(es)

cell-cell signaling
nervous system development
axon guidance
synapse assembly
brain-derived neurotrophic factor receptor signaling pathway
positive regulation of brain-derived neurotrophic factor receptor signaling pathway
negative regulation of neuron apoptotic process
collateral sprouting
positive regulation of collateral sprouting
positive regulation of synapse assembly

Function(s)

neurotrophin TRKB receptor binding
growth factor activity