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See other SDF4 CNV Assays ›
Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1218780 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00706866_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 6 - Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK000717.1 4 1782
AK027277.1 BAB55012.1
AK055331.1 1 1514
AK075352.1 BAC11563.1
AK126927.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss SAMD11 FAAP20 TMEM88B SLC35E2B LOC100129534 LOC284600 AGRN SKI PUSL1 CFAP74 CALML6 CCNL2 TTLL10-AS1 MIR6723 NOC2L LOC105378949 CPTP VWA1 MIR200B CDK11A MXRA8 LOC102724312 NADK LOC100132287 LOC105378947 MMP23A LOC100130417 ATAD3B AURKAIP1 LINC01342 LOC107985729 FAM87B LOC105378589 KLHL17 LOC148413 UBE2J2 RNF223 LOC100133331 MIR6727 LOC107985728 PLEKHN1 ATAD3C ACAP3 TAS1R3 TMEM52 ANKRD65 TTLL10 B3GALT6 FAM138A MIR429 LOC105378592 MIR6808 LOC105378948 TNFRSF4 SSU72 PERM1 LOC105378591 LOC100506504 ISG15 MMP23B SLC35E2 DDX11L1 SCNN1D SDF4 OR4F29 GNB1 ATAD3A TNFRSF18 LOC100287934 MIR6859-2 CPSF3L LOC100288069 LOC100288175 LINC01128 DVL1 TMEM240 HES4 MRPL20 MORN1 MIR1302-2 MIR6726 LOC107984841 FAM132A LOC101928626 MTND1P23 GABRD MIB2 CDK11B OR4F5 PRKCZ MIR200A MTND2P28 FAM41C LINC00115 OR4F16 LOC102725121 WASH7P LOC729737 MIR6859-1 FNDC10 LOC100134822 C1orf159
nsv544965 Chr.1:1217251 - 1306704 on Build GRCh38 Loss FAM132A SCNN1D SDF4 ACAP3 UBE2J2 MIR6726 B3GALT6
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain FAM132A MIR429 SCNN1D SDF4 UBE2J2 TTLL10-AS1 RNF223 TNFRSF18 LOC105378948 TNFRSF4 MIR200A LINC01342 MIR200B C1orf159 TTLL10 B3GALT6
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss FAM132A MIR429 SCNN1D SDF4 UBE2J2 TTLL10-AS1 RNF223 TNFRSF18 TNFRSF4 MIR200A ACAP3 LINC01342 MIR200B MIR6726 C1orf159 TTLL10 B3GALT6
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss SDF4 TTLL10-AS1 TNFRSF18 TNFRSF4 TTLL10 B3GALT6
nsv159887 Chr.1:1217713 - 1222580 on Build GRCh38 Deletion SDF4
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain MIR429 SAMD11 LOC100130417 LOC105378948 TNFRSF4 LOC284600 AGRN MIR200A LINC01342 PERM1 ISG15 FAM41C KLHL17 SDF4 TTLL10-AS1 RNF223 LOC107985728 TNFRSF18 PLEKHN1 NOC2L LOC100288175 HES4 MIR200B C1orf159 TTLL10
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication FAM132A MIR429 LOC105378948 TNFRSF4 AGRN MIR200A LINC01342 PUSL1 SCNN1D SDF4 UBE2J2 TTLL10-AS1 RNF223 MIR6727 TNFRSF18 CPSF3L LOC100288175 CPTP ACAP3 TAS1R3 MIR200B MIR6726 C1orf159 TTLL10 B3GALT6
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MIR429 SAMD11 TMEM88B MIR6808 LOC105378948 SLC35E2B TNFRSF4 LOC284600 SSU72 AGRN PERM1 ISG15 PUSL1 MMP23B SLC35E2 SCNN1D SDF4 CCNL2 TTLL10-AS1 ATAD3A TNFRSF18 LOC100287934 NOC2L CPSF3L LOC100288069 LOC100288175 LINC01128 DVL1 TMEM240 CPTP HES4 VWA1 MRPL20 MIR200B MIR6726 CDK11A MXRA8 LOC102724312 NADK FAM132A MMP23A LOC100130417 ATAD3B MIB2 AURKAIP1 CDK11B MIR200A LINC01342 LOC107985729 FAM41C LINC00115 FAM87B KLHL17 LOC148413 UBE2J2 RNF223 MIR6727 LOC107985728 PLEKHN1 ATAD3C ACAP3 TAS1R3 FNDC10 ANKRD65 C1orf159 TTLL10 B3GALT6
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss FAM132A MIR429 SAMD11 LOC100130417 LOC105378948 TNFRSF4 LOC284600 AGRN MIR200A LINC01342 PERM1 ISG15 FAM41C LINC00115 FAM87B KLHL17 SDF4 UBE2J2 TTLL10-AS1 RNF223 LOC107985728 TNFRSF18 PLEKHN1 NOC2L LOC100288175 LINC01128 HES4 MIR200B C1orf159 TTLL10 B3GALT6
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion FAM132A MIR429 TMEM88B MIR6808 ATAD3B MIB2 AURKAIP1 CDK11B TNFRSF4 SSU72 MIR200A LINC01342 LOC107985729 PUSL1 MMP23B SCNN1D SDF4 LOC148413 CCNL2 UBE2J2 TTLL10-AS1 MIR6727 ATAD3A TNFRSF18 CPSF3L ATAD3C DVL1 TMEM240 CPTP ACAP3 TAS1R3 VWA1 FNDC10 MRPL20 MIR200B ANKRD65 MIR6726 MXRA8 C1orf159 LOC102724312 TTLL10 B3GALT6
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain FAM132A MIR429 SAMD11 TMEM88B LOC100130417 MIR6808 LOC105378948 AURKAIP1 TNFRSF4 LOC284600 AGRN MIR200A LINC01342 PERM1 ISG15 PUSL1 KLHL17 SCNN1D SDF4 LOC148413 CCNL2 UBE2J2 TTLL10-AS1 RNF223 MIR6727 LOC107985728 TNFRSF18 PLEKHN1 NOC2L CPSF3L LOC100288175 DVL1 CPTP ACAP3 HES4 TAS1R3 MRPL20 MIR200B ANKRD65 MIR6726 MXRA8 C1orf159 TTLL10 B3GALT6
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion KLHL17 MIR429 SDF4 SAMD11 TTLL10-AS1 RNF223 TNFRSF18 PLEKHN1 LOC105378948 TNFRSF4 NOC2L LOC100288175 AGRN MIR200A HES4 LINC01342 PERM1 MIR200B ISG15 C1orf159 TTLL10
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain FAM132A MIR429 SCNN1D SDF4 UBE2J2 TTLL10-AS1 MIR6727 TNFRSF18 TNFRSF4 CPSF3L MIR200A ACAP3 MIR200B MIR6726 TTLL10 PUSL1 B3GALT6

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