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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2184878 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00717842_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 13 - Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication TPSB2 DDX11L10 GNG13 TELO2 JMJD8 SOX8 RGS11 HBQ1 PGP TPSD1 MIR3178 WDR90 DNASE1L2 LOC105371046 MIR3177 SNORA78 DECR2 RPL3L MCRIP2 PTX4 SSTR5 LUC7L ATP6V0C LOC105371038 TBL3 ABCA3 SNORA10 MIR662 NUBP2 LOC652276 E4F1 CACNA1H SNORD60 PKD1 WDR24 LMF1 MRPL28 CCDC154 NTHL1 PRSS27 FLJ42627 CRAMP1 RHBDF1 CEMP1 RHBDL1 SNHG9 HAGHL MRPS34 RAB11FIP3 NDUFB10 METTL26 NHLRC4 LOC107984876 SNRNP25 LOC105371047 SLC9A3R2 C16orf59 LOC100287175 TRAF7 LMF1-AS1 ERVK13-1 NME4 LOC729652 MIR3176 SNORA64 HBM PRR25 ABCA17P RAB40C LINC00254 RPUSD1 NOXO1 UNKL RNF151 PIGQ RPS2 HBZ SSTR5-AS1 TSR3 LOC106660606 BRICD5 MSRB1 BAIAP3 SNHG19 MIR6767 LOC105371184 AMDHD2 WASIR2 MIR5587 METRN NPRL3 FAHD1 LINC00235 RAB26 TPSG1 HBA2 MIR4717 MSLN HN1L POLR3K TBC1D24 TSC2 WFIKKN1 RNPS1 MPG ARHGDIG MIR3180-5 C16orf91 HS3ST6 RPL23AP5 HBA1 LOC105371049 MIR1225 IFT140 ZNF598 FAM234A NARFL SPSB3 TMEM8A NME3 PRSS29P MIR3677 PDIA2 NPW FBXL16 C1QTNF8 ECI1 CCNF LOC101929280 SYNGR3 STUB1 MIR6859-4 GNPTG MLST8 MEIOB MAPK8IP3 CHTF18 AXIN1 EME2 NTN3 TPSAB1 HAGH CCDC78 RHOT2 CAPN15 LOC107987233 CLCN7 KCTD5 FAM173A UBE2I PRR35 TMEM204 CASKIN1 PDPK1 GFER MIR4516 MIR6768 MIR6511B1 IGFALS LOC105371045 MIR940 LOC100134368
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss ECI1 SLC9A3R2 SYNGR3 MIR4717 TRAF7 PGP MLST8 DNASE1L2 TSC2 RNPS1 NOXO1 MIR3180-5 TBL3 ABCA3 E4F1 LOC106660606 BRICD5 SNORD60 PKD1 LOC105371049 SNHG19 MIR1225 ZNF598 CASKIN1 NTHL1 GFER MIR4516 MIR6511B1 MIR3677 MIR940 NPW RAB26
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss ECI1 E4F1 BRICD5 SNORD60 PKD1 LOC105371049 SNHG19 TRAF7 PGP MIR1225 MLST8 DNASE1L2 CASKIN1 TSC2 MIR4516 MIR6511B1 MIR3180-5 RAB26
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss ECI1 E4F1 LOC106660606 BRICD5 SNORD60 SNHG19 TRAF7 PGP MLST8 DNASE1L2 CASKIN1 RNPS1 MIR3677 MIR940 RAB26
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR4516 MIR6511B1 SNORD60 PKD1 LOC105371049 SNHG19 TRAF7 MIR3180-5 MIR1225 CASKIN1 TSC2 RAB26
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss ECI1 RNPS1 E4F1 LOC106660606 BRICD5 TRAF7 PGP MLST8 MIR3677 MIR940 DNASE1L2 CASKIN1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain ECI1 CCNF C16orf59 MIR4717 TRAF7 PGP MLST8 LOC729652 MIR3178 TBC1D24 DNASE1L2 TSC2 ABCA17P RNPS1 NTN3 MIR3180-5 ATP6V0C ABCA3 LOC652276 E4F1 LOC106660606 BRICD5 SNORD60 PKD1 LOC105371049 SNHG19 MIR1225 CASKIN1 PDPK1 MIR6767 MIR4516 MIR6768 MIR6511B1 CEMP1 AMDHD2 MIR3677 MIR940 RAB26
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion ECI1 E4F1 LOC106660606 BRICD5 SNORD60 MIR4717 SNHG19 TRAF7 PGP MLST8 DNASE1L2 CASKIN1 RNPS1 MIR3677 MIR940 ABCA3 RAB26

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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