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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2184878 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00717842_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 13 - Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication PDIA2 RPL3L FAM173A PTX4 E4F1 RGS11 CRAMP1 ATP6V0C NUBP2 NME4 SLC9A3R2 MIR6768 LOC105371038 TELO2 LOC105371045 POLR3K MIR3176 RHBDL1 ABCA3 NARFL LINC00235 LOC652276 TSC2 RNF151 PRR35 CLCN7 MPG RAB40C DECR2 FAM234A RAB26 RPL23AP5 PRSS29P TBC1D24 MIR3180-5 MIR6511B1 C16orf59 NPW MIR5587 MSRB1 RHOT2 MSLN HBQ1 HBA1 MCRIP2 CCNF GNG13 NDUFB10 RAB11FIP3 WDR24 MIR6767 ARHGDIG MEIOB LOC105371047 FAHD1 MIR6859-4 BRICD5 NTHL1 UBE2I LUC7L ERVK13-1 HS3ST6 SNHG9 MIR662 SOX8 TPSB2 HBZ LINC00254 PIGQ SNHG19 NTN3 HBM HBA2 AXIN1 LOC107987233 CCDC154 MRPL28 METTL26 TPSAB1 CACNA1H NOXO1 NHLRC4 ABCA17P SNORA10 PGP C16orf91 LMF1 IFT140 GFER RHBDF1 CASKIN1 LOC100287175 BAIAP3 SYNGR3 AMDHD2 HN1L NPRL3 LOC107984876 LOC729652 SSTR5 MIR4717 MRPS34 SNORD60 LOC106660606 LOC105371184 SNRNP25 DNASE1L2 TMEM204 CEMP1 EME2 HAGHL MIR4516 SNORA64 TSR3 MIR940 TRAF7 LOC105371046 CAPN15 PDPK1 FBXL16 UNKL WDR90 SNORA78 FLJ42627 IGFALS LMF1-AS1 MIR3677 MIR3177 STUB1 RPUSD1 DDX11L10 NME3 CCDC78 PKD1 MAPK8IP3 ZNF598 RNPS1 TMEM8A KCTD5 MIR3178 RPS2 LOC100134368 PRR25 HAGH JMJD8 CHTF18 METRN ECI1 WASIR2 MLST8 WFIKKN1 LOC101929280 PRSS27 C1QTNF8 TPSD1 TBL3 SPSB3 TPSG1 MIR1225 SSTR5-AS1 GNPTG LOC105371049
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss GFER CASKIN1 SYNGR3 E4F1 BRICD5 NTHL1 SLC9A3R2 SNORD60 PKD1 ZNF598 DNASE1L2 RNPS1 TSC2 SNHG19 MIR4516 ECI1 MLST8 RAB26 NOXO1 MIR3180-5 MIR6511B1 NPW PGP TRAF7 TBL3 MIR1225 LOC105371049
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss CASKIN1 TSC2 SNHG19 MIR4516 E4F1 ECI1 MLST8 BRICD5 RAB26 MIR3180-5 MIR6511B1 PGP TRAF7 SNORD60 PKD1 MIR1225 DNASE1L2 LOC105371049
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss CASKIN1 SNHG19 E4F1 ECI1 MIR3677 MLST8 BRICD5 RAB26 MIR940 PGP TRAF7 SNORD60 LOC106660606 DNASE1L2 RNPS1
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss RAB26 CASKIN1 MIR3180-5 MIR6511B1 TSC2 SNHG19 TRAF7 MIR4516 SNORD60 PKD1 MIR1225 LOC105371049
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain CASKIN1 MIR6767 AMDHD2 E4F1 MIR3677 BRICD5 LOC729652 ATP6V0C MIR6768 MIR4717 SNORD60 LOC106660606 PKD1 DNASE1L2 RNPS1 ABCA3 CEMP1 MIR3178 LOC652276 TSC2 SNHG19 NTN3 MIR4516 ECI1 MLST8 RAB26 MIR940 TBC1D24 ABCA17P MIR3180-5 MIR6511B1 C16orf59 PGP TRAF7 MIR1225 CCNF PDPK1 LOC105371049
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss CASKIN1 MIR940 PGP TRAF7 E4F1 LOC106660606 ECI1 MIR3677 DNASE1L2 RNPS1 MLST8 BRICD5
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion CASKIN1 SNHG19 E4F1 ECI1 MIR3677 MLST8 BRICD5 RAB26 MIR940 PGP TRAF7 MIR4717 SNORD60 LOC106660606 DNASE1L2 RNPS1 ABCA3

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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