Hs00738824_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:850352 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Overlaps Exon 7 - Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	PDDC1 SNORA52 LOC171391 POLR2L TSPAN4 CEND1 CHID1 RPLP2 PIDD1 SLC25A22 CD151 CRACR2B PANO1 PNPLA2
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	DRD4 MIR210 HRAS MIR210HG SNORA52 CHID1 RPLP2 PKP3 MIR6744 PIDD1 IRF7 TMEM80 CDHR5 DEAF1 PTDSS2 SLC25A22 TALDO1 LOC101927503 CD151 TOLLIP RASSF7 CRACR2B PANO1 LOC101059906 PDDC1 LRRC56 LOC171391 POLR2L TSPAN4 MUC6 CEND1 MUC5AC PHRF1 AP2A2 EPS8L2 MUC2 SIGIRR B4GALNT4 LOC143666 ANO9 LMNTD2 SCT RNH1 MUC5B PNPLA2
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	PDDC1 SNORA52 LOC171391 POLR2L TSPAN4 CEND1 CHID1 RPLP2 AP2A2 PIDD1 SLC25A22 CD151 CRACR2B PANO1 PNPLA2
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	DRD4 MIR210 HRAS MIR210HG SNORA52 CHID1 RPLP2 MIR6744 PIDD1 IRF7 TMEM80 CDHR5 DEAF1 PTDSS2 SLC25A22 TALDO1 LOC101927503 CD151 TOLLIP RASSF7 CRACR2B PANO1 LOC101059906 PDDC1 LRRC56 LOC171391 POLR2L TSPAN4 MUC6 CEND1 MUC5AC PHRF1 AP2A2 EPS8L2 MUC2 SIGIRR LOC143666 ANO9 TOLLIP-AS1 LMNTD2 SCT RNH1 MUC5B PNPLA2
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	POLR2L TSPAN4 CHID1
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	POLR2L TSPAN4
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	SNORA52 POLR2L TSPAN4 CD151 CHID1 RPLP2 AP2A2 CRACR2B PIDD1 PNPLA2
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	DRD4 MIR210 HRAS MIR210HG SNORA52 CHID1 RPLP2 PKP3 PIDD1 IRF7 TMEM80 CDHR5 DEAF1 PTDSS2 SLC25A22 TALDO1 CD151 RASSF7 CRACR2B PANO1 LOC101059906 PDDC1 LRRC56 LOC171391 POLR2L TSPAN4 CEND1 PHRF1 AP2A2 EPS8L2 SIGIRR B4GALNT4 LOC143666 ANO9 LMNTD2 SCT RNH1 PNPLA2
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	PDDC1 SNORA52 LOC171391 POLR2L TSPAN4 CEND1 CHID1 RPLP2 PIDD1 SLC25A22 CD151 CRACR2B PANO1 PNPLA2
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	DRD4 MIR210 HRAS MIR210HG SNORA52 CHID1 RPLP2 PIDD1 IRF7 TMEM80 CDHR5 DEAF1 PTDSS2 SLC25A22 TALDO1 CD151 RASSF7 CRACR2B PANO1 LOC101059906 PDDC1 LRRC56 LOC171391 POLR2L TSPAN4 CEND1 PHRF1 EPS8L2 LOC143666 LMNTD2 SCT RNH1 PNPLA2
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	POLR2L TSPAN4 CD151 CHID1 CRACR2B PNPLA2
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	PDDC1 SNORA52 LOC171391 POLR2L TSPAN4 CEND1 CHID1 RPLP2 PIDD1 SLC25A22 TALDO1 CD151 CRACR2B PANO1 PNPLA2

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding