Hs00738824_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:850352 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Overlaps Exon 7 - Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025234.1			NP_001020405.1
	NM_001025235.1			NP_001020406.1
	NM_001025236.1			NP_001020407.1
	NM_001025237.1			NP_001020408.1
	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	XM_005253102.1			XP_005253159.1
	XM_005253104.1			XP_005253161.1
	XM_011520336.1			XP_011518638.1
	XM_011520337.2			XP_011518639.1
	XM_011520338.1			XP_011518640.1
	XM_011520339.2			XP_011518641.1
	XM_011520340.2			XP_011518642.1
	XM_011520341.2			XP_011518643.1
	AF022813.1			AAC51864.1
	AF054841.1			AAC69717.1
	AK126456.1
	AK291089.1
	AL543667.3
	BC000389.2			AAH00389.1
	BC019314.2			AAH19314.1
	BC093031.1			AAH93031.1
	BF530006.1
	BG752017.1
	BI820547.1
	BM755435.1
	BT006776.1			AAP35422.1
	CR457108.1			CAG33389.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	CRACR2B CHID1 PANO1 RPLP2 PNPLA2 CEND1 PDDC1 SLC25A22 PIDD1 SNORA52 CD151 LOC171391 POLR2L TSPAN4
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	CHID1 PANO1 RPLP2 MIR210HG CEND1 CDHR5 PDDC1 SLC25A22 EPS8L2 PTDSS2 MIR6744 B4GALNT4 TOLLIP SNORA52 LOC143666 LOC101927503 SIGIRR AP2A2 CD151 LOC171391 LOC101059906 DRD4 POLR2L TSPAN4 MUC2 TALDO1 CRACR2B SCT PKP3 PNPLA2 PIDD1 IRF7 MUC6 RNH1 LMNTD2 TMEM80 MIR210 MUC5B HRAS LRRC56 ANO9 MUC5AC DEAF1 PHRF1 RASSF7
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	CRACR2B CHID1 PANO1 RPLP2 PNPLA2 CEND1 PDDC1 SLC25A22 PIDD1 SNORA52 AP2A2 CD151 LOC171391 POLR2L TSPAN4
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	CHID1 POLR2L TSPAN4
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	CHID1 PANO1 RPLP2 MIR210HG CEND1 CDHR5 PDDC1 SLC25A22 EPS8L2 PTDSS2 MIR6744 TOLLIP SNORA52 TOLLIP-AS1 LOC143666 LOC101927503 SIGIRR AP2A2 CD151 LOC171391 LOC101059906 DRD4 POLR2L TSPAN4 MUC2 TALDO1 CRACR2B SCT PNPLA2 PIDD1 IRF7 MUC6 RNH1 LMNTD2 TMEM80 MIR210 MUC5B HRAS LRRC56 ANO9 MUC5AC DEAF1 PHRF1 RASSF7
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	CRACR2B CHID1 RPLP2 PNPLA2 PIDD1 AP2A2 CD151 POLR2L TSPAN4 SNORA52
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	POLR2L TSPAN4
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	CRACR2B CHID1 PANO1 RPLP2 PNPLA2 CEND1 PDDC1 SLC25A22 PIDD1 SNORA52 CD151 LOC171391 POLR2L TSPAN4
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	CHID1 PANO1 RPLP2 MIR210HG CEND1 CDHR5 PDDC1 SLC25A22 EPS8L2 PTDSS2 B4GALNT4 SNORA52 LOC143666 SIGIRR AP2A2 CD151 LOC171391 LOC101059906 DRD4 POLR2L TSPAN4 TALDO1 CRACR2B SCT PKP3 PNPLA2 PIDD1 IRF7 RNH1 LMNTD2 TMEM80 MIR210 HRAS LRRC56 ANO9 DEAF1 PHRF1 RASSF7
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CRACR2B CHID1 PNPLA2 CD151 POLR2L TSPAN4
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	CHID1 PANO1 RPLP2 MIR210HG CEND1 CDHR5 PDDC1 SLC25A22 EPS8L2 PTDSS2 SNORA52 LOC143666 CD151 LOC171391 LOC101059906 DRD4 POLR2L TSPAN4 TALDO1 CRACR2B SCT PNPLA2 PIDD1 IRF7 RNH1 LMNTD2 TMEM80 MIR210 HRAS LRRC56 DEAF1 PHRF1 RASSF7
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	TALDO1 CRACR2B CHID1 PANO1 RPLP2 PNPLA2 CEND1 PDDC1 SLC25A22 PIDD1 SNORA52 CD151 LOC171391 POLR2L TSPAN4

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding