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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2177177 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00743952_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 20
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1

Target Gene Details

Entrez Gene ID:

 84231

Gene Name:

 TNF receptor associated factor 7

Gene Aliases:

 RFWD1, RNF119

Location:

 Chr.16:2155752-2178129 on Build GRCh38

Assay Gene Location:

 Within Exon 21
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRAF7 NM_032271.2 21 2715 NP_115647.2
XM_005255627.4 21 2755 XP_005255684.1
XM_011522700.1 21 2757 XP_011521002.1
AL136921.1 20 2611 CAB66855.1
AY569455.1 20 2668 AAS68363.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication NHLRC4 PRR35 DECR2 LOC105371049 LOC105371045 MIR3176 MSRB1 LMF1 RPL23AP5 PRSS29P LOC100134368 BAIAP3 LOC105371184 E4F1 NTHL1 FAHD1 METRN MIR940 SLC9A3R2 RHBDL1 LOC107984876 TSC2 MRPS34 RPS2 SYNGR3 MPG LUC7L HAGHL JMJD8 PRSS27 MIR4717 MAPK8IP3 NARFL LOC652276 NPRL3 ERVK13-1 SNRNP25 TPSD1 SOX8 EME2 C16orf91 TMEM8A MIR3178 METTL26 NDUFB10 WDR90 TRAF7 TPSB2 LINC00235 ABCA3 DDX11L10 MIR3180-5 FAM234A PKD1 NOXO1 NME4 MIR662 NTN3 RAB11FIP3 HAGH ZNF598 NPW RAB26 MIR3177 MEIOB C16orf59 LOC101929280 MIR5587 CAPN15 C1QTNF8 AXIN1 MCRIP2 FAM173A SNORA64 TMEM204 IFT140 PDIA2 BRICD5 HS3ST6 MIR6767 GFER SSTR5-AS1 LOC105371038 RGS11 RNPS1 LOC107987233 CCNF LOC105371046 LMF1-AS1 MIR4516 RAB40C KCTD5 LOC106660606 TBL3 TPSAB1 LINC00254 FLJ42627 MIR6511B1 CRAMP1 NUBP2 TPSG1 HBQ1 GNG13 CLCN7 TBC1D24 PGP STUB1 HBA2 LOC105371047 DNASE1L2 MIR6859-4 SNORA78 WASIR2 SPSB3 RHBDF1 IGFALS LOC729652 SNHG9 ATP6V0C CCDC154 CACNA1H SSTR5 HN1L FBXL16 MIR1225 RNF151 PTX4 MRPL28 ARHGDIG MLST8 CHTF18 MIR3677 GNPTG POLR3K ECI1 UBE2I HBA1 NME3 AMDHD2 HBZ SNORD60 SNHG19 WDR24 HBM MSLN CASKIN1 TELO2 PIGQ RPL3L ABCA17P TSR3 SNORA10 CEMP1 MIR6768 WFIKKN1 CCDC78 RPUSD1 LOC100287175 RHOT2 PRR25 UNKL PDPK1
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss ABCA3 MLST8 RNPS1 MIR3677 LOC105371049 MIR4516 ECI1 LOC106660606 MIR3180-5 TBL3 PKD1 MIR6511B1 NOXO1 E4F1 NTHL1 SNORD60 SNHG19 MIR940 SLC9A3R2 ZNF598 CASKIN1 NPW RAB26 TSC2 PGP SYNGR3 DNASE1L2 MIR4717 MIR1225 BRICD5 GFER TRAF7
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss DNASE1L2 MLST8 LOC105371049 MIR4516 ECI1 MIR3180-5 PKD1 MIR6511B1 E4F1 SNORD60 SNHG19 MIR1225 BRICD5 CASKIN1 RAB26 TSC2 TRAF7 PGP
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss DNASE1L2 MLST8 RNPS1 MIR3677 ECI1 LOC106660606 E4F1 SNORD60 SNHG19 MIR940 BRICD5 CASKIN1 RAB26 TRAF7 PGP
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR6511B1 LOC105371049 MIR4516 SNORD60 SNHG19 MIR1225 MIR3180-5 CASKIN1 RAB26 TSC2 PKD1 TRAF7
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain CASKIN1 TRAF7
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss E4F1 DNASE1L2 MLST8 RNPS1 MIR3677 MIR940 BRICD5 ECI1 LOC106660606 CASKIN1 TRAF7 PGP
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain ABCA3 MLST8 RNPS1 MIR3677 CCNF LOC105371049 MIR4516 ECI1 LOC106660606 MIR3180-5 PKD1 AMDHD2 MIR6511B1 E4F1 SNORD60 SNHG19 MIR940 NTN3 CASKIN1 TBC1D24 RAB26 TSC2 PGP ABCA17P DNASE1L2 C16orf59 MIR4717 CEMP1 MIR6768 LOC652276 LOC729652 ATP6V0C MIR1225 BRICD5 MIR3178 PDPK1 MIR6767 TRAF7
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion DNASE1L2 ABCA3 MLST8 RNPS1 MIR3677 MIR4717 ECI1 LOC106660606 E4F1 SNORD60 SNHG19 MIR940 BRICD5 CASKIN1 RAB26 TRAF7 PGP

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