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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2177177 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00743952_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 20
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1

Target Gene Details

Entrez Gene ID:

 84231

Gene Name:

 TNF receptor associated factor 7

Gene Aliases:

 RFWD1, RNF119

Location:

 Chr.16:2155752-2178129 on Build GRCh38

Assay Gene Location:

 Within Exon 21
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRAF7 NM_032271.2 21 2715 NP_115647.2
XM_005255627.4 21 2755 XP_005255684.1
XM_011522700.1 21 2757 XP_011521002.1
AL136921.1 20 2611 CAB66855.1
AY569455.1 20 2668 AAS68363.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication NME4 AXIN1 C16orf91 MIR3677 HS3ST6 LOC105371184 CCNF PKD1 POLR3K MIR6511B1 HBM PRSS27 TBL3 SNRNP25 LOC100287175 LOC107984876 GFER MSLN RAB26 MSRB1 ARHGDIG CAPN15 LOC105371045 MIR3180-5 KCTD5 NTHL1 LMF1 RPL23AP5 CCDC154 TSC2 RPS2 RNPS1 WDR24 SPSB3 MRPL28 NUBP2 MIR3176 CHTF18 FBXL16 STUB1 MIR3178 LOC106660606 TPSD1 METRN SNORA10 NHLRC4 IGFALS PGP RHOT2 UBE2I SNORA64 FAHD1 NTN3 PRR35 NPW MLST8 TBC1D24 C1QTNF8 LOC105371038 MAPK8IP3 PIGQ MRPS34 WFIKKN1 SYNGR3 FAM173A LOC105371049 HAGHL MEIOB HBZ CASKIN1 METTL26 SNORA78 CACNA1H MIR4717 NDUFB10 ERVK13-1 SOX8 ABCA3 MCRIP2 ATP6V0C LOC107987233 LINC00254 SNORD60 WDR90 DNASE1L2 NOXO1 TELO2 TMEM204 RGS11 RAB40C DECR2 LOC652276 GNPTG LUC7L TSR3 SLC9A3R2 CRAMP1 FAM234A RAB11FIP3 PRR25 PTX4 BRICD5 RHBDF1 MIR4516 NARFL HBA2 LOC105371046 FLJ42627 MIR1225 SSTR5 LOC101929280 AMDHD2 MIR6859-4 LOC105371047 RNF151 MIR5587 RHBDL1 SNHG19 MIR6767 WASIR2 MIR940 LOC729652 ABCA17P SNHG9 TPSAB1 CLCN7 UNKL TRAF7 LOC100134368 NME3 JMJD8 IFT140 GNG13 MIR3177 PRSS29P DDX11L10 TMEM8A ZNF598 PDPK1 TPSG1 E4F1 HAGH RPL3L TPSB2 LINC00235 PDIA2 MIR662 LMF1-AS1 RPUSD1 HN1L NPRL3 BAIAP3 C16orf59 MIR6768 ECI1 HBQ1 MPG CCDC78 SSTR5-AS1 EME2 HBA1 CEMP1
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss SNORD60 DNASE1L2 NOXO1 PGP SNHG19 PKD1 MIR6511B1 TBL3 NPW MLST8 TRAF7 GFER SLC9A3R2 RAB26 ZNF598 E4F1 SYNGR3 MIR3180-5 LOC105371049 BRICD5 NTHL1 TSC2 MIR4516 RNPS1 CASKIN1 ECI1 MIR1225
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss E4F1 SNORD60 MIR3180-5 LOC105371049 DNASE1L2 BRICD5 PGP SNHG19 TSC2 MIR4516 PKD1 MIR6511B1 CASKIN1 ECI1 MLST8 TRAF7 MIR1225 RAB26
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss E4F1 SNORD60 MIR3677 LOC106660606 DNASE1L2 BRICD5 PGP SNHG19 MIR940 RNPS1 CASKIN1 ECI1 MLST8 TRAF7 RAB26
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss PKD1 MIR6511B1 SNORD60 CASKIN1 MIR3180-5 LOC105371049 TRAF7 SNHG19 TSC2 MIR1225 RAB26 MIR4516
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain CASKIN1 TRAF7
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain ATP6V0C SNORD60 AMDHD2 MIR3178 MIR3677 LOC106660606 DNASE1L2 CCNF PGP SNHG19 MIR6767 PKD1 MIR940 NTN3 LOC729652 MIR6511B1 LOC652276 ABCA17P MLST8 TRAF7 TBC1D24 RAB26 PDPK1 E4F1 MIR3180-5 LOC105371049 BRICD5 TSC2 MIR4516 RNPS1 C16orf59 CASKIN1 MIR6768 ECI1 MIR4717 ABCA3 MIR1225 CEMP1
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss MIR940 RNPS1 E4F1 MIR3677 LOC106660606 CASKIN1 DNASE1L2 ECI1 MLST8 TRAF7 BRICD5 PGP
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion E4F1 SNORD60 MIR3677 LOC106660606 DNASE1L2 BRICD5 PGP SNHG19 MIR940 RNPS1 CASKIN1 ECI1 MLST8 TRAF7 MIR4717 ABCA3 RAB26

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