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See other CHTF18 CNV Assays ›
Gene Symbol
CHTF18
Assay Reference Genome
Location

Chr.16:789678 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00756504_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 63922

Gene Name:

 chromosome transmission fidelity factor 18

Gene Aliases:

 C16orf41, C321D2.2, C321D2.3, C321D2.4, CHL12, Ctf18, RUVBL

Location:

 Chr.16:788622-798074 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 3 - Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CHTF18 NM_022092.2 NP_071375.1
XM_005255470.1 XP_005255527.1
XM_005255471.3 XP_005255528.1
XM_011522572.1 XP_011520874.1
XM_017023532.1 XP_016879021.1
XM_017023533.1 XP_016879022.1
XM_017023534.1 XP_016879023.1
AK024476.1 BAB15766.1
AK128869.1
AK293846.1
AK309804.1
BC006278.2 AAH06278.2
BC006437.1 AAH06437.1
BC018184.1 AAH18184.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4828n54 Chr.16:760143 - 828324 on Build GRCh38 Gain MSLN CHTF18 RPUSD1 PRR25 GNG13 MIR662
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain MSLN CHTF18 RPUSD1 PRR25 GNG13 MIR662
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LOC105371045 MIR5587 ARHGDIG GNG13 MIR4717 IFT140 MRPL28 SPSB3 TPSB2 RPUSD1 JMJD8 SNHG9 RPL23AP5 LOC100287175 C1QTNF8 RAB40C MIR3180-5 MIR6767 RHBDL1 PIGQ MSRB1 CACNA1H SOX8 PDPK1 TPSAB1 SNRNP25 RGS11 CHTF18 RNPS1 LUC7L FAM173A TPSG1 FAHD1 METRN LOC105371038 PRSS27 TRAF7 NUBP2 POLR3K MCRIP2 HBA2 HBZ NME3 SLC9A3R2 DECR2 CASKIN1 CCDC78 LMF1-AS1 HBA1 ZNF598 RHOT2 MIR6768 HBQ1 NPW UNKL PKD1 SYNGR3 TBL3 SNORD60 C16orf91 TSC2 MRPS34 MLST8 MIR1225 TELO2 LOC107987233 PDIA2 LINC00254 BAIAP3 LOC652276 TMEM8A MIR662 NHLRC4 SNORA10 SNHG19 HBM IGFALS LOC101929280 CAPN15 HAGHL HN1L MPG NARFL MAPK8IP3 WASIR2 STUB1 GNPTG CCNF SSTR5 RNF151 ERVK13-1 MIR6859-4 E4F1 FAM234A AXIN1 TSR3 PRR35 LMF1 MIR3176 ABCA17P MSLN MIR3178 HS3ST6 AMDHD2 MIR3677 UBE2I NPRL3 MEIOB MIR4516 RAB11FIP3 GFER TMEM204 NME4 LOC105371046 CCDC154 MIR3177 LOC105371049 ABCA3 CRAMP1 BRICD5 MIR940 WFIKKN1 TPSD1 WDR24 DNASE1L2 ATP6V0C NTN3 FLJ42627 CEMP1 LOC107984876 SNORA64 WDR90 TBC1D24 PTX4 LOC729652 LOC100134368 RPS2 SSTR5-AS1 LOC105371047 PRR25 PRSS29P CLCN7 RAB26 RHBDF1 C16orf59 NOXO1 METTL26 NDUFB10 ECI1 FBXL16 LINC00235 EME2 LOC106660606 KCTD5 DDX11L10 NTHL1 MIR6511B1 LOC105371184 RPL3L SNORA78 HAGH PGP
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss LOC105371038 WFIKKN1 WDR24 MIR5587 MCRIP2 GNG13 WDR90 LOC101929280 CAPN15 HAGHL NARFL STUB1 CCDC78 RPUSD1 PRR25 JMJD8 RHOT2 PRR35 MIR3176 LOC100287175 METTL26 MSLN RAB40C FBXL16 LINC00235 RHBDL1 PIGQ RAB11FIP3 CHTF18 LOC107987233 FAM173A LOC105371184 MIR662 NHLRC4 METRN
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss LOC105371038 WFIKKN1 WDR24 MIR5587 MCRIP2 GNG13 WDR90 LOC101929280 CAPN15 HAGHL NARFL STUB1 CCDC78 RPUSD1 PRR25 JMJD8 RHOT2 PRR35 MIR3176 LOC100287175 METTL26 MSLN RAB40C FBXL16 LINC00235 RHBDL1 PIGQ RAB11FIP3 CHTF18 LOC107987233 FAM173A LOC105371184 MIR662 NHLRC4 METRN
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion LOC105371038 WFIKKN1 WDR24 MIR5587 MCRIP2 GNG13 LOC107984876 WDR90 LOC101929280 CAPN15 HAGHL NARFL SSTR5-AS1 STUB1 CCDC78 SSTR5 RPUSD1 PRR25 JMJD8 LMF1-AS1 RHOT2 PRR35 LMF1 MIR3176 LOC100287175 METTL26 MSLN C1QTNF8 RAB40C FBXL16 LINC00235 RHBDL1 PIGQ RAB11FIP3 SOX8 CHTF18 LOC107987233 FAM173A LOC105371184 MIR662 NHLRC4 METRN
nsv571042 Chr.16:785298 - 847566 on Build GRCh38 Loss CHTF18 RPUSD1 PRR25 GNG13
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication LOC105371038 WFIKKN1 WDR24 MCRIP2 GNG13 WDR90 LOC101929280 HAGHL NARFL STUB1 CCDC78 RPUSD1 JMJD8 RHOT2 LOC100287175 METTL26 MSLN RAB40C FBXL16 RHBDL1 PIGQ CHTF18 FAM173A LOC105371184 MIR662 METRN
nsv571043 Chr.16:787857 - 798755 on Build GRCh38 Loss CHTF18 RPUSD1 GNG13
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication LOC105371038 WFIKKN1 WDR24 MIR5587 MCRIP2 GNG13 WDR90 LOC101929280 CAPN15 HAGHL NARFL STUB1 CCDC78 RPUSD1 PRR25 JMJD8 RHOT2 PRR35 MIR3176 LOC100287175 METTL26 MSLN RAB40C FBXL16 LINC00235 RHBDL1 PIGQ RAB11FIP3 CHTF18 LOC107987233 FAM173A LOC105371184 MIR662 NHLRC4 METRN
nsv817712 Chr.16:774098 - 810673 on Build GRCh38 Loss CHTF18 RPUSD1 PRR25 GNG13
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss MSLN LOC105371038 WDR24 FBXL16 MCRIP2 RHBDL1 GNG13 WDR90 HAGHL NARFL CHTF18 STUB1 CCDC78 FAM173A RPUSD1 JMJD8 LOC105371184 RHOT2 MIR662 METRN LOC100287175
dgv4827n54 Chr.16:760039 - 810673 on Build GRCh38 Loss MSLN CHTF18 RPUSD1 PRR25 GNG13 MIR662

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More Information


Additional Information:

For this assay, SNP(s) [rs78038349] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

DNA metabolism protein

Gene Ontology Categories:

Function(s) Process(es)


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