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See other CDHR5 CNV Assays ›
Gene Symbol
CDHR5
Assay Reference Genome
Location

Chr.11:624680 on build GRCh38
Cytoband
11p15.5
Assay ID Hs00821833_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 53841

Gene Name:

 cadherin related family member 5

Gene Aliases:

 MLPCDH, MU-PCDH, MUCDHL, MUPCDH

Location:

 Chr.11:616565-625067 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 1 - Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CDHR5 NM_001171968.1 NP_001165439.1
NM_021924.4 NP_068743.2
NM_031264.3 NP_112554.2
XM_006718253.3 XP_006718316.1
XM_011520188.2 XP_011518490.1
XM_011520189.2 XP_011518491.1
XM_011520190.2 XP_011518492.1
XM_011520191.2 XP_011518493.1
AF258675.1 AAG16732.1
AF258676.1 AAG16733.1
AF258677.1
AF258678.1
AF258679.1
AF276242.1 AAG30821.1
AF301909.1 AAG33495.1
AK000226.1 BAA91021.1
AK000384.1 BAA91130.1
AK300991.1
AK308040.1
AK309157.1
AY358368.1 AAQ88734.1
BC038405.1 AAH38405.1
DA373160.1
DQ491193.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv552865 Chr.11:612843 - 626730 on Build GRCh38 Loss SCT CDHR5 IRF7
dgv1522n54 Chr.11:557342 - 656845 on Build GRCh38 Loss DRD4 SCT CDHR5 PHRF1 DEAF1 IRF7 MIR210HG MIR210 LOC143666 LMNTD2 RASSF7
nsv951270 Chr.11:528401 - 628100 on Build GRCh38 Deletion SCT LOC101059906 CDHR5 PHRF1 IRF7 MIR210HG LRRC56 MIR210 LOC143666 LMNTD2 RASSF7 HRAS
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss LOC101059906 TSPAN4 DEAF1 RPLP2 MIR6744 PANO1 LMNTD2 HRAS DRD4 SCT PKP3 EPS8L2 MUC5B CDHR5 LOC101927503 SNORA52 SLC25A22 TMEM80 LOC171391 CEND1 RASSF7 MUC2 RNH1 MUC6 MUC5AC B4GALNT4 POLR2L PHRF1 PDDC1 IRF7 LOC143666 CD151 PIDD1 SIGIRR ANO9 PTDSS2 CRACR2B TALDO1 CHID1 MIR210HG LRRC56 MIR210 TOLLIP PNPLA2 AP2A2
nsv552861 Chr.11:589246 - 662407 on Build GRCh38 Loss DRD4 SCT CDHR5 PHRF1 DEAF1 IRF7
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss LOC101059906 TSPAN4 DEAF1 RPLP2 MIR6744 PANO1 LMNTD2 HRAS DRD4 SCT EPS8L2 MUC5B CDHR5 LOC101927503 SNORA52 SLC25A22 TMEM80 LOC171391 CEND1 RASSF7 MUC2 RNH1 MUC6 MUC5AC TOLLIP-AS1 POLR2L PHRF1 PDDC1 IRF7 LOC143666 CD151 PIDD1 SIGIRR ANO9 PTDSS2 CRACR2B TALDO1 CHID1 MIR210HG LRRC56 MIR210 TOLLIP PNPLA2 AP2A2
esv2762889 Chr.11:606294 - 653614 on Build GRCh38 Loss DRD4 SCT CDHR5 PHRF1 DEAF1 IRF7
nsv1039558 Chr.11:534242 - 672091 on Build GRCh38 Gain PHRF1 DEAF1 IRF7 LOC143666 LMNTD2 HRAS DRD4 SCT CDHR5 MIR210HG LRRC56 MIR210 RASSF7
nsv1053964 Chr.11:491334 - 692433 on Build GRCh38 Gain RNH1 LOC101059906 PHRF1 DEAF1 IRF7 LOC143666 LMNTD2 HRAS PTDSS2 DRD4 SCT CDHR5 MIR210HG LRRC56 MIR210 RASSF7
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion LOC101059906 TSPAN4 DEAF1 RPLP2 PANO1 LMNTD2 HRAS DRD4 SCT PKP3 EPS8L2 CDHR5 SNORA52 SLC25A22 TMEM80 LOC171391 CEND1 RASSF7 RNH1 B4GALNT4 POLR2L PHRF1 PDDC1 IRF7 LOC143666 CD151 PIDD1 SIGIRR ANO9 PTDSS2 CRACR2B TALDO1 CHID1 MIR210HG LRRC56 MIR210 PNPLA2 AP2A2
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion LOC101059906 TSPAN4 DEAF1 RPLP2 PANO1 LMNTD2 HRAS DRD4 SCT EPS8L2 CDHR5 SNORA52 SLC25A22 TMEM80 LOC171391 CEND1 RASSF7 RNH1 POLR2L PHRF1 PDDC1 IRF7 LOC143666 CD151 PIDD1 PTDSS2 CRACR2B TALDO1 CHID1 MIR210HG LRRC56 MIR210 PNPLA2

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More Information


Additional Information:

For this assay, SNP(s) [rs200052779,rs72844723] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Function(s) Process(es)


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