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See other CDHR5 CNV Assays ›
Gene Symbol
CDHR5
Assay Reference Genome
Location

Chr.11:624680 on build GRCh38
Cytoband
11p15.5
Assay ID Hs00821833_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 53841

Gene Name:

 cadherin related family member 5

Gene Aliases:

 MLPCDH, MU-PCDH, MUCDHL, MUPCDH

Location:

 Chr.11:616565-625067 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 1 - Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CDHR5 NM_001171968.1 NP_001165439.1
NM_021924.4 NP_068743.2
NM_031264.3 NP_112554.2
XM_006718253.3 XP_006718316.1
XM_011520188.2 XP_011518490.1
XM_011520189.2 XP_011518491.1
XM_011520190.2 XP_011518492.1
XM_011520191.2 XP_011518493.1
AF258675.1 AAG16732.1
AF258676.1 AAG16733.1
AF258677.1
AF258678.1
AF258679.1
AF276242.1 AAG30821.1
AF301909.1 AAG33495.1
AK000226.1 BAA91021.1
AK000384.1 BAA91130.1
AK300991.1
AK308040.1
AK309157.1
AY358368.1 AAQ88734.1
BC038405.1 AAH38405.1
DA373160.1
DQ491193.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv1523n54 Chr.11:557342 - 656940 on Build GRCh38 Gain CDHR5 SCT PHRF1 IRF7 LMNTD2 DRD4 MIR210 RASSF7 DEAF1 LOC143666 MIR210HG
nsv552865 Chr.11:612843 - 626730 on Build GRCh38 Loss CDHR5 SCT IRF7
nsv951270 Chr.11:528401 - 628100 on Build GRCh38 Deletion CDHR5 SCT LOC101059906 HRAS PHRF1 IRF7 LMNTD2 LRRC56 MIR210 RASSF7 LOC143666 MIR210HG
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss SCT PTDSS2 MUC5B MUC2 LOC101927503 LRRC56 MIR210 RASSF7 PIDD1 EPS8L2 RPLP2 CEND1 CDHR5 MIR6744 AP2A2 ANO9 LMNTD2 DRD4 TSPAN4 MUC5AC LOC171391 MUC6 LOC101059906 IRF7 RNH1 MIR210HG B4GALNT4 TMEM80 PKP3 HRAS PDDC1 PHRF1 PNPLA2 CHID1 SLC25A22 DEAF1 PANO1 LOC143666 CD151 TALDO1 TOLLIP CRACR2B POLR2L SIGIRR SNORA52
nsv552861 Chr.11:589246 - 662407 on Build GRCh38 Loss CDHR5 SCT PHRF1 IRF7 DRD4 DEAF1
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss SCT PTDSS2 MUC5B MUC2 LOC101927503 LRRC56 MIR210 RASSF7 PIDD1 EPS8L2 RPLP2 CEND1 CDHR5 MIR6744 AP2A2 ANO9 LMNTD2 DRD4 TSPAN4 MUC5AC TOLLIP-AS1 LOC171391 MUC6 LOC101059906 IRF7 RNH1 MIR210HG TMEM80 HRAS PDDC1 PHRF1 PNPLA2 CHID1 SLC25A22 DEAF1 PANO1 LOC143666 CD151 TALDO1 TOLLIP CRACR2B POLR2L SIGIRR SNORA52
esv2762889 Chr.11:606294 - 653614 on Build GRCh38 Loss CDHR5 SCT PHRF1 IRF7 DRD4 DEAF1
nsv1039558 Chr.11:534242 - 672091 on Build GRCh38 Gain SCT IRF7 LRRC56 MIR210 RASSF7 MIR210HG CDHR5 HRAS PHRF1 LMNTD2 DRD4 DEAF1 LOC143666
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion SCT PTDSS2 LRRC56 MIR210 RASSF7 PIDD1 EPS8L2 RPLP2 CEND1 CDHR5 AP2A2 ANO9 LMNTD2 DRD4 TSPAN4 LOC171391 LOC101059906 IRF7 RNH1 MIR210HG B4GALNT4 TMEM80 PKP3 HRAS PDDC1 PHRF1 PNPLA2 CHID1 SLC25A22 DEAF1 PANO1 LOC143666 CD151 TALDO1 CRACR2B POLR2L SIGIRR SNORA52
nsv1053964 Chr.11:491334 - 692433 on Build GRCh38 Gain SCT PTDSS2 LOC101059906 IRF7 LRRC56 RNH1 MIR210 RASSF7 MIR210HG CDHR5 HRAS PHRF1 LMNTD2 DRD4 DEAF1 LOC143666
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion SCT PTDSS2 LRRC56 MIR210 RASSF7 PIDD1 EPS8L2 RPLP2 CEND1 CDHR5 LMNTD2 DRD4 TSPAN4 LOC171391 LOC101059906 IRF7 RNH1 MIR210HG TMEM80 HRAS PDDC1 PHRF1 PNPLA2 CHID1 SLC25A22 DEAF1 PANO1 LOC143666 CD151 TALDO1 CRACR2B POLR2L SNORA52

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More Information


Additional Information:

For this assay, SNP(s) [rs200052779,rs72844723] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Function(s) Process(es)


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